Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00592 ATGGCTTTTGTGCAATGGAGTTTCTTGGCTTGGTTTGTTTGCTTTTCTGTGGGACTTGAGACCCTAGCCAATTCTTGTGACCAGCATGATTTGTTGGGCCTGAAGGAATTTGCAGGCAACCTTACAAAAGGGTCTATCATTACAGCATGGTCAGATGATGTTTTCTGCTGCAAATGGGTTGGAGTTGTTTGTGAAGATGTGGTTGATGGAGGTAGTAGAGTGTCCAAGTTGATTCTACCTGGAATGGGTCTTAACGGAACACTTTCAAGTTCTTTAGCTTCCCTGGATCAGCTGAAAGTGCTTGATATTTCGTTCAATCGTCTCCAAGGTGAATTGCCTTCCGAGTTCTCTAATTTGAAGCAGTTAGAAGTTCTTGATTTGAGCCATAATATTCTGTCTGGACCACTTGTTGGGGCACTCTCTGGTTTGCAATCCCTTCAGATACTGAATATTTCTAGCAATTTATTTGTTGGAGAGCTCTTCCAATTTGGGGGATTACAACATCTCGTTGCTCTCAACATAAGCAACAATTCATTCACTGGCCAGTTCAATTCTCAAATTTGCAGCTTCTCCAAGGGTATTCATATTCTTGATATATCACAAAATAATTTTTCTGGTGGTCTTGAATGGTTGGCAAACTGCAGCACATCTGTCCAAGAGTTACATTTGGATTCCAATTTTTTTACTGGCTATCTTCCTGATTCCTTGTATTCAATGTCAGCATTGGAGCAGCTCTCAGTCTCTATGAACAACCTCTCCGGTCAGTTAAGCATGAAGCTAAGTAACCTCTCAAACCTAAAATCTCTAATAATTTCCGGAAATCGGTTTTCTGGGGAGCTCCCTAATGTTTTTGGTAATCTTTCGGACCTTGAACAGCTAATAGGGCACTCCAATTCATTTTCTGGATCATTACCTTCCACCTTGGCCTTATGCTCAAAACTTCAAGTTCTTGATCTTCGGAATAATTCATTGACAGGTTCTGTTAGTCTTAATTTCACTGGGTTGTCTAATCTTTCCACGTTGGACCTTGGTAGCAATCATTTTAATGGACCTCTTCCAAATTCCGTGTTCAATTGCCATAAATTGACAATGTTAAGCCTTGCAAAAAATGAATTAACAGGCCAAATCCCTGAGAGTTATGCGAACCTCACTTCACTTTTGACTCTGTCTCTGTCAAACAACAGCTTTGAGAACCTATCTGGGGCGCTTTATGTACTGCAGCACTGCAAAAATCTCACAACTCTTATCCTCACAAAGAATTTCCGTGGTGAAGAAATTTCAGAAAATTTAACGTTAAGCTTCAAGAGCCTTGTGGTGTTAGCACTTGGAAACTGTGGTCTCAAAGGCCGTATTCCTGTTTGGCTGTTAAAATGCTCGAAATTGGAAGTTCTTGATTTGTCATGGAACCATTTGGAAGGCAGTGTCCCTTCTTGGATTGGTTGGATGGATCATCTGTTCTACTTGGATTTGTCAAATAATTCTCTTACTGGAGAAATACCAAAAGGTTTGACAGAGCTGAAGGGCCTCATATCCCTAAATTATCATATATCAAATCTCTTTGCATCTGCTGCTATTCCTCTCTATGTCAAGAGAAACAAGAGTGCTAATGGGTTGCAATATAACCATGCTTCGAGTTTCCCTCCATCAATATACTTGAGCAATAACAGATTAAGTGGAACAATATGGCCTGAAATAGGTCGTTTGAGAGAACTTCATATCTTAGATTTAAGCAGGAACAACATCACCGGCACAATTCCCAGCTCTATCTCTGAGATGAAGAATTTGGAAACATTAGACTTATCTAATAATAATCTATACGGAACTATTCCTCCATCATTTAACAACCTCACATTCTTGTCTAAGTTCAGTGTGGCATATAATCACTTGTGGGGAACAATTCCAGCTGGGGGACAATTTTCAAGTTTCCCAAATTCAAGTTTTGAGGGCAACCTGGGCCTTTGTGGGGAAACATACAATCATTGTAACAATGAAAAAAATGTCGACATTTCCACTCCTTCCTCGGGTAAATTCGGTAAAAGCAGTGTCCTTGGCATCACAATTGGTTCTGGAGTGGGCCTTGCACTACTTATTGCAGTTATTCTTCTAAGAATGTCAAAGAAGGATGAGGATAAACCGGTGGATAACTTTGATGAGGAGCTTAGCTGGCCAAACAGGGTACCTGAAGCAGTTGTTTCTTCAAAATTGGTTCTTTTTCAGAATTCAGATTGCAAGGATCTCACAGTTGAAGATTTGATAAAATCTACCAACAACTTTAACCAAGAAAACATAATTGGTTGTGGTGGGTTTGGCCTTGTCTACAAGGCAAATCTTCAAAATGGCAGAAAGGTAGCTGTGAAGAAACTTTCGGGATACTGTGGTCAGGTGGAACGAGAATTCCAAGCAGAAGTGGAGGCACTCTCTAGAGCTCAACATAAGAACCTTGTTTCACTCAAAGGTTATTGTCAGCATGTTAATGACCGATTGTTAATTTACTCCTACTTGGAGAATGGAAGCCTTGACTATTGGTTGCATGAGAGTGAGGATGGAAATTCAGCTCTAAAATGGAATGTAAGACTCAAGATAGCTCAAGGTGCAGCTCATGGACTAGCTTATTTGCACAAGGAGTGTGAACCACATATTGTGCACAGAGATATTAAATCTAGCAACATACTTTTGGATGATAAATTCGAAGCTTATTTGGCTGATTTTGGTCTTTCAAGGCTACTTCAACCCTATGATACACATGTTTCAACAGATTTAGTTGGAACTTTGGGATATATTCCTCCAGAATATAGTCAAGCACTGAAAGCAACATTCAAAGGTGATATTTATAGCTTTGGTGTTGTTCTTGTTGAGCTTCTCACTGGTCGAAGGCCTGTAGAAGTCATTGTGGGGCAATGCAGCAGGAATCTAGTGTCTTGGGTGTTTCAGATGAAATCTGAAAATAGGGATCAAGAAATTTTTGATTCAGTCATTTGGCATAAGGATATTGAGAAACAGCTCTTAGAGGTACTAGCTATTGCTTGTAAATGTATAGATGCAGATCCAAGGCAGAGACCCCATATTGAATTAGTTGTTTCATGGCTTGATGGTGTAGGATTTGATGGCTCTGAATAG 3117 0.3994 MAFVQWSFLAWFVCFSVGLETLANSCDQHDLLGLKEFAGNLTKGSIITAWSDDVFCCKWVGVVCEDVVDGGSRVSKLILPGMGLNGTLSSSLASLDQLKVLDISFNRLQGELPSEFSNLKQLEVLDLSHNILSGPLVGALSGLQSLQILNISSNLFVGELFQFGGLQHLVALNISNNSFTGQFNSQICSFSKGIHILDISQNNFSGGLEWLANCSTSVQELHLDSNFFTGYLPDSLYSMSALEQLSVSMNNLSGQLSMKLSNLSNLKSLIISGNRFSGELPNVFGNLSDLEQLIGHSNSFSGSLPSTLALCSKLQVLDLRNNSLTGSVSLNFTGLSNLSTLDLGSNHFNGPLPNSVFNCHKLTMLSLAKNELTGQIPESYANLTSLLTLSLSNNSFENLSGALYVLQHCKNLTTLILTKNFRGEEISENLTLSFKSLVVLALGNCGLKGRIPVWLLKCSKLEVLDLSWNHLEGSVPSWIGWMDHLFYLDLSNNSLTGEIPKGLTELKGLISLNYHISNLFASAAIPLYVKRNKSANGLQYNHASSFPPSIYLSNNRLSGTIWPEIGRLRELHILDLSRNNITGTIPSSISEMKNLETLDLSNNNLYGTIPPSFNNLTFLSKFSVAYNHLWGTIPAGGQFSSFPNSSFEGNLGLCGETYNHCNNEKNVDISTPSSGKFGKSSVLGITIGSGVGLALLIAVILLRMSKKDEDKPVDNFDEELSWPNRVPEAVVSSKLVLFQNSDCKDLTVEDLIKSTNNFNQENIIGCGGFGLVYKANLQNGRKVAVKKLSGYCGQVEREFQAEVEALSRAQHKNLVSLKGYCQHVNDRLLIYSYLENGSLDYWLHESEDGNSALKWNVRLKIAQGAAHGLAYLHKECEPHIVHRDIKSSNILLDDKFEAYLADFGLSRLLQPYDTHVSTDLVGTLGYIPPEYSQALKATFKGDIYSFGVVLVELLTGRRPVEVIVGQCSRNLVSWVFQMKSENRDQEIFDSVIWHKDIEKQLLEVLAIACKCIDADPRQRPHIELVVSWLDGVGFDGSE 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00592 1038 ProSiteProfiles Protein kinase domain profile. 758 1029 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00592 1038 SUPERFAMILY L domain-like 45 293 - -
Vimu5g00592 1038 SMART LRR_typ_2 383 406 IPR003591 -
Vimu5g00592 1038 SMART LRR_typ_2 482 506 IPR003591 -
Vimu5g00592 1038 SMART LRR_typ_2 568 591 IPR003591 -
Vimu5g00592 1038 SMART LRR_typ_2 263 286 IPR003591 -
Vimu5g00592 1038 SMART LRR_typ_2 335 359 IPR003591 -
Vimu5g00592 1038 SMART LRR_typ_2 95 118 IPR003591 -
Vimu5g00592 1038 SMART LRR_typ_2 119 142 IPR003591 -
Vimu5g00592 1038 SMART LRR_typ_2 592 615 IPR003591 -
Vimu5g00592 1038 PANTHER LEUCINE RICH REPEAT KINASE 2 286 1029 - -
Vimu5g00592 1038 Pfam Leucine Rich Repeat 265 287 IPR001611 GO:0005515
Vimu5g00592 1038 ProSitePatterns Protein kinases ATP-binding region signature. 764 787 IPR017441 GO:0005524
Vimu5g00592 1038 Pfam Protein kinase domain 759 1025 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00592 1038 Gene3D Phosphorylase Kinase; domain 1 724 833 - -
Vimu5g00592 1038 Pfam Leucine rich repeat 97 155 IPR001611 GO:0005515
Vimu5g00592 1038 Pfam Leucine rich repeat 313 372 IPR001611 GO:0005515
Vimu5g00592 1038 Pfam Leucine rich repeat 569 629 IPR001611 GO:0005515
Vimu5g00592 1038 Gene3D Ribonuclease Inhibitor 163 254 IPR032675 -
Vimu5g00592 1038 Gene3D Ribonuclease Inhibitor 27 162 IPR032675 -
Vimu5g00592 1038 Gene3D Ribonuclease Inhibitor 255 355 IPR032675 -
Vimu5g00592 1038 PRINTS Leucine-rich repeat signature 592 605 - -
Vimu5g00592 1038 PRINTS Leucine-rich repeat signature 485 498 - -
Vimu5g00592 1038 FunFam Tyrosine-sulfated glycopeptide receptor 1 332 666 - -
Vimu5g00592 1038 Gene3D Ribonuclease Inhibitor 361 669 IPR032675 -
Vimu5g00592 1038 ProSitePatterns Serine/Threonine protein kinases active-site signature. 880 892 IPR008271 GO:0004672|GO:0006468
Vimu5g00592 1038 SMART LRR_sd22_2 568 591 - -
Vimu5g00592 1038 SMART LRR_sd22_2 119 145 - -
Vimu5g00592 1038 SMART LRR_sd22_2 95 118 - -
Vimu5g00592 1038 SMART LRR_sd22_2 482 505 - -
Vimu5g00592 1038 SMART LRR_sd22_2 311 340 - -
Vimu5g00592 1038 SMART LRR_sd22_2 239 265 - -
Vimu5g00592 1038 SMART LRR_sd22_2 592 618 - -
Vimu5g00592 1038 SMART LRR_sd22_2 383 401 - -
Vimu5g00592 1038 SMART serkin_6 758 1029 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00592 1038 Gene3D Transferase(Phosphotransferase) domain 1 834 1033 - -
Vimu5g00592 1038 CDD STKc_IRAK 764 1031 - -
Vimu5g00592 1038 FunFam Phytosulfokine receptor 1 721 833 - -
Vimu5g00592 1038 FunFam Leucine-rich repeat receptor-like protein kinase 834 1037 - -
Vimu5g00592 1038 ProSiteProfiles Leucine-rich repeat profile. 594 616 IPR001611 GO:0005515
Vimu5g00592 1038 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 58 294 - -
Vimu5g00592 1038 Pfam Leucine Rich repeat 457 473 IPR001611 GO:0005515
Vimu5g00592 1038 SUPERFAMILY L domain-like 538 654 - -
Vimu5g00592 1038 SUPERFAMILY Protein kinase-like (PK-like) 740 1029 IPR011009 -
Vimu5g00592 1038 SUPERFAMILY RNI-like 217 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00592 Vimu-Chr5 6482022 6485138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00592 57 1038 Receptor kinase-like Gene Family AT1G55610 34.982 1.14e-163 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vimu5g00592 Pkinase 1.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00592 - - gmx:100789534 1763.04