Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00587 ATGGATGTTCAAAAACCTCTATACCTCTTCTTGCTTCTCCTCACTCTTCTCTCAAGCTCCCAAGCCAAGAAATTCAACGTTGGTGGAAGCCAAGGCTGGGTTCCAAATCCTTCCGAGAGTTACAACAACTGGGCTGGAAGAAACCGATTCCAAATCAATGACACAATAGTTTTCAAGTACAAGAAGGGTTCGGACTCGGTGTTGGAAGTGAAGAAGGAAGATTATGAGAAGTGCAACAAGACCAACCCAATGAAGAAGTTCGAAAATGGTGACACTGAGTTCAAGTTTGATCGATCAGGACCATTTTACTTCATTAGTGGAAAAGATGGAAACTGTGAAAAGGGTCAGAAATTGATTGTTGTTGTTTTATCCCCTAGAAAATCACCATCACCTTCACCATCACCATTGTTGCCACCAAAATATTTGCCTTCACCCTCACCAAAGCCAAACCCACCAACCGTTTCGCCTTCCTCTCCACCGGTTCAACCTCCGTCACCGGCCAACGGGCCTTCAGCAGCAGCTCCGGGACCTGAAAACTGGTATCCAGCGACAGCTCCGGCACCTGAAACCATGTACCCGGTGACTTCTCCTCCGGCTCCGCCACCGGAGACGGGAACTCCACCGCCGTTTCCGGCGGGGCCAATTTCTCCACCGCAGTCATCCACGGGGCCAACTTCCCCACCGCAGTCGCAGCCGTCTAGTTCAACGGCGCCGTCACCGACGAATGGTGGTTTTGCTAAGGCTCCTTCAAACGCTTTGGTGTATTTCGTTACAATTGTCGTTGGTGGTGTTATGTTGCGTTATTGA 807 0.4969 MDVQKPLYLFLLLLTLLSSSQAKKFNVGGSQGWVPNPSESYNNWAGRNRFQINDTIVFKYKKGSDSVLEVKKEDYEKCNKTNPMKKFENGDTEFKFDRSGPFYFISGKDGNCEKGQKLIVVVLSPRKSPSPSPSPLLPPKYLPSPSPKPNPPTVSPSSPPVQPPSPANGPSAAAPGPENWYPATAPAPETMYPVTSPPAPPPETGTPPPFPAGPISPPQSSTGPTSPPQSQPSSSTAPSPTNGGFAKAPSNALVYFVTIVVGGVMLRY 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00587 268 MobiDBLite consensus disorder prediction 125 248 - -
Vimu5g00587 268 Gene3D - 21 127 IPR008972 -
Vimu5g00587 268 MobiDBLite consensus disorder prediction 191 225 - -
Vimu5g00587 268 MobiDBLite consensus disorder prediction 226 246 - -
Vimu5g00587 268 MobiDBLite consensus disorder prediction 128 171 - -
Vimu5g00587 268 FunFam Early nodulin-like protein 1 22 127 - -
Vimu5g00587 268 SUPERFAMILY Cupredoxins 22 123 IPR008972 -
Vimu5g00587 268 PANTHER BLUE COPPER PROTEIN 24 170 IPR039391 GO:0009055
Vimu5g00587 268 Pfam Plastocyanin-like domain 33 116 IPR003245 GO:0009055
Vimu5g00587 268 CDD OsENODL1_like 23 122 IPR041846 -
Vimu5g00587 268 PRINTS Proline rich extensin signature 193 214 - -
Vimu5g00587 268 PRINTS Proline rich extensin signature 175 187 - -
Vimu5g00587 268 PRINTS Proline rich extensin signature 123 135 - -
Vimu5g00587 268 PRINTS Proline rich extensin signature 144 160 - -
Vimu5g00587 268 ProSiteProfiles Phytocyanin domain profile. 23 124 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00587 Vimu-Chr5 6380820 6381768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00587 3 206 Phytocyanin Superfamily AT5G53870 46.635 1.46e-53 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00587 - - vra:106755782 289.656