Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00539 ATGGCATTAACTTCTTCTACTCTGACATCCTTCACATCATTCTTTTGCCTCTGTGTGTTTTGTGTTAATGCAGTAACCTACAAAGAAATTTTGCAAACAGGACAATCACTGGGAACCTCAGACTCGGTTGTTTCAGATAGCGGGAAGTTTGAATTGTGTTTTTTCAACAGAGTCAGAGATAATTCAACCAAGTACTACGTTGGTATACGGTATAAAAGGGTTCCAAACGACAAGAACAAGATTGTGTGGGTTGCAAACCGAGACTACGCACTTGAAACATCCTCAGCAGTTCTTACCTTTCAACCTGATGGAAATTTTGTGATCATGGATGGACAAGTCACATACCGTGTCAACAAGGTTTCAAACAATTTCAGTATCTATGCCATGCTCTTGGATTCAGGAAACTTGATACTGCTGAAAACCTCAAATAAACAGATTTTGTGGCAGAGTTTTGATCATCCGACAGACACCCTTTTACCCGGAATGAAACTAGGACATGATAAAGGTAACACTTGGTCATTGCGATCATGGACAAGTGCAGATGACCCTGCTCCAGGAGCTTTTTCCCTCGAATATAATCTGGGCAGGGTCAGCCTAATCATCAACAATGGCTCTAATGCGTTCTGGATTGACGATCACTACAACGATACTATTGGCAATTTTATTCGCCGAAGTGGTGTGTCTATGGACAGCTATTTCACTTTGCCAGTTGGTAATGACTCTAGGTTGGTACTAGAAGTGTCTGGTGAGCTCAACCAGGAATATTGGTCTGATGAACAACGACATTGGGTTTCTATTCAGTCATCCAAGTGTGCTAATAATTCGTGTGGAGCCTTTTCCATCTGTAACCCGAAAGCTCGTGACCCTTGTGACTGTCTTTATGGTTTCAGGCCCTCTGATGCTGATTCTTGGAACAATGGGAACAAATCTGCTGGCTGTGTAAGGAACAAAGACTTATCTTCCTGCAGTAACGCTGCTGAATCCAACGATAAATTCAAGCAACTTTATAATGTTAAATCACCAACTTTGGACAGTCTCAGGAAGATCAATACAACAAAAGAGTGTGAAAGTACTTGTTCTAGAAATTGTTCTTGCCTTGCTTTCGCTTATTATTTGAACGGTGATTGCCAGTTGTGGCTTGGTTCTGTATTGAATTTAAAGAACGTCTCAACAGATGTCGACAATTCTGATAATAGCAATCCAATTTTTTACCTAAGACTTGCTGCCTCAGAATTAGATGATTCTGGGGAAGATTTGCTGCATTTTGATATAAGCATGAGCATGAAAGTTGAAGATTCTGAGCTTACCGAATCAGATAGGAGTGCCAAAGTGAAGAAGGAAGTGAAATTGCCTTTATTCAGTTTCGAGAGTGTTGCAGCTGCAACTAATAATTTCTCAGATGCAAATAAACTTGGTGAGGGGGGCTTTGGACCCGGTACATTATTTAATGGGGATGAGGTTGCCGTGAAAAGACTGTCACGGAGATCTGGTCAAGGATGGGAAGAGTTGAGAAATGAAGCTTTGTTAATTGCAAAACTCCAACACAACAATCTTGTTAGACTTCTTGGTTGCTGCATTGATCGAAATGAAAAGATGCTGATTTATGAGTTTATGCCTAATAAAAGCTTGGATCTTTTCCTTTTTGATGCTACAAAGAAACAGATGCTAGATTGGGGAACAAGAGTCAGAATAATCGATGGGATTGCCCAAGGAATTCTTTATCTTCATCAGTATTCCAGGTTCAGGATCATTCACCGAGATTTAAAAGCTAGCAACATATTGTTGGACAGCCATATGAATCCCAAAATATCAGATTTTGGATTGGCAAAAATATTTGGTGATAATGAACTTCAAGCAAATACAAATCGAATCAAAAGATTCATTAAAGATAGTATTTTTAACTTAACACCTCAAGACAATGATGACTTTATATGGTATGATTTCTTATATGGTGTTCACTTGAAATTTTCATCATGTGATGAAGCTTGGGATCTTTGGACAAGAAATTCAGGACTGGATCTAATGGATAGTGCATTAGATGACAGTGATACTTTAGGTAATAACAGTATGCATACTGTGCCAAGATATGTGAACATAGGACTTCTTTGCGTTCAAGAAAGTCCAGAAGATAGACCAACCATGTCTGATGTTGTATCAATGATTGGGAATGACACTGTGCCCCTTCCTTCTCCTAAACCACCTGCATTTCTTAAGGTCAGAGGTGATCATAGTTCATCATTGCCCTCCACTTCCACAGAAAGATTTTCTGTCGACTATCCAGGTCGACCACCCACCAAGCTGATTATCCAGGCCGATCATTCGGGTCACCAGGCCGATCATCCGGGTCATCCGACCGATCATCCAGGCCGACCATTCGGATCATTAGACCGACCATCAAGGTCGACCAACTACCAGACCAACCATCAGGCCGACCATCCAGGTCGACCAACCACCAGGCCGATCATCCAGGTCGATCATCCGGGTCACCAGGCCGATCATCCAGGTCACCAGGCCGACAAATGTGTAGTGGAGGGGGGTCGGCCGGGCCGGTCGGACCAAGGACAGTGGAGGGAGTTCGGGCAGCTGAGGGCCGAACAGTGTGGAGCCGGTAGAAGTGAGGTTGTAGGAGCATTGATGGGCCTTGATGAAGATATAACGGAAGGACCTCCCGGTGGATTCCAAAAGGACATCGAGAAGACGAACAGGTTGGACGGTCGGAGGCAGGTCCAAAGGGTCGATTCAGTTTCGGGCTCTAACACCGAAACATTTGGCGCCCACCGTGGGGCCGAGCTAGTCTTCCCCATTGACGTCAACACAACCTTTCGACCTCAACCGCTCGGCCTCAACCATCCAGCCCTTCGACCTCCATTATTCGGCCCATCGGCCCCAACTATTCGGCCCATCGGCCTCAATTGCTCGGCCCATCGGCCTCAACCATCCGGCCCTTTGGCCTCGATTGCTCGGCCCTTCGGCCTTAATCATCTGGCTCTTCAGGCAATCGTGAATCTTCAAATAAAGAATCCCGACCGGCCTTTCCGAAGGTCGGCGACCGTGGATCTTCAACAAAATATCCCAGTCGGCCTTTCCGAAGGTCGGCGACCGTGGATCTTCAACAAAATATCTCGGCCGGCCTTTCCGAAGGTTGGCGACCGTGGATCTTCAACAAAATATCCCGGCCGGCCTTTCTGA 3189 0.4472 MALTSSTLTSFTSFFCLCVFCVNAVTYKEILQTGQSLGTSDSVVSDSGKFELCFFNRVRDNSTKYYVGIRYKRVPNDKNKIVWVANRDYALETSSAVLTFQPDGNFVIMDGQVTYRVNKVSNNFSIYAMLLDSGNLILLKTSNKQILWQSFDHPTDTLLPGMKLGHDKGNTWSLRSWTSADDPAPGAFSLEYNLGRVSLIINNGSNAFWIDDHYNDTIGNFIRRSGVSMDSYFTLPVGNDSRLVLEVSGELNQEYWSDEQRHWVSIQSSKCANNSCGAFSICNPKARDPCDCLYGFRPSDADSWNNGNKSAGCVRNKDLSSCSNAAESNDKFKQLYNVKSPTLDSLRKINTTKECESTCSRNCSCLAFAYYLNGDCQLWLGSVLNLKNVSTDVDNSDNSNPIFYLRLAASELDDSGEDLLHFDISMSMKVEDSELTESDRSAKVKKEVKLPLFSFESVAAATNNFSDANKLGEGGFGPGTLFNGDEVAVKRLSRRSGQGWEELRNEALLIAKLQHNNLVRLLGCCIDRNEKMLIYEFMPNKSLDLFLFDATKKQMLDWGTRVRIIDGIAQGILYLHQYSRFRIIHRDLKASNILLDSHMNPKISDFGLAKIFGDNELQANTNRIKRFIKDSIFNLTPQDNDDFIWYDFLYGVHLKFSSCDEAWDLWTRNSGLDLMDSALDDSDTLGNNSMHTVPRYVNIGLLCVQESPEDRPTMSDVVSMIGNDTVPLPSPKPPAFLKVRGDHSSSLPSTSTERFSVDYPGRPPTKLIIQADHSGHQADHPGHPTDHPGRPFGSLDRPSRSTNYQTNHQADHPGRPTTRPIIQVDHPGHQADHPGHQADKCVVEGGRPGRSDQGQWREFGQLRAEQCGAGRSEVVGALMGLDEDITEGPPGGFQKDIEKTNRLDGRRQVQRVDSVSGSNTETFGAHRGAELVFPIDVNTTFRPQPLGLNHPALRPPLFGPSAPTIRPIGLNCSAHRPQPSGPLASIARPFGLNHLALQAIVNLQIKNPDRPFRRSATVDLQQNIPVGLSEGRRPWIFNKISRPAFPKVGDRGSSTKYPGRPF 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00539 1062 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 712 - -
Vimu5g00539 1062 Pfam D-mannose binding lectin 81 177 IPR001480 -
Vimu5g00539 1062 ProSiteProfiles Bulb-type lectin domain profile. 28 151 IPR001480 -
Vimu5g00539 1062 SUPERFAMILY Protein kinase-like (PK-like) 451 754 IPR011009 -
Vimu5g00539 1062 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 183 IPR036426 -
Vimu5g00539 1062 SMART blect_4 28 154 IPR001480 -
Vimu5g00539 1062 MobiDBLite consensus disorder prediction 724 761 - -
Vimu5g00539 1062 SMART serkin_6 465 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00539 1062 ProSitePatterns Serine/Threonine protein kinases active-site signature. 583 595 IPR008271 GO:0004672|GO:0006468
Vimu5g00539 1062 Pfam S-locus glycoprotein domain 220 299 IPR000858 GO:0048544
Vimu5g00539 1062 Gene3D Phosphorylase Kinase; domain 1 439 537 - -
Vimu5g00539 1062 Gene3D - 23 152 IPR036426 -
Vimu5g00539 1062 Gene3D Transferase(Phosphotransferase) domain 1 644 726 - -
Vimu5g00539 1062 Gene3D Transferase(Phosphotransferase) domain 1 538 629 - -
Vimu5g00539 1062 CDD B_lectin 29 154 IPR001480 -
Vimu5g00539 1062 SMART ntp_6 327 399 IPR003609 -
Vimu5g00539 1062 Pfam PAN-like domain 322 385 IPR003609 -
Vimu5g00539 1062 FunFam Uncharacterized protein 440 537 - -
Vimu5g00539 1062 ProSiteProfiles PAN/Apple domain profile. 322 408 IPR003609 -
Vimu5g00539 1062 Pfam Protein tyrosine and serine/threonine kinase 470 720 IPR001245 GO:0004672|GO:0006468
Vimu5g00539 1062 MobiDBLite consensus disorder prediction 773 818 - -
Vimu5g00539 1062 ProSiteProfiles Protein kinase domain profile. 465 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00539 1062 MobiDBLite consensus disorder prediction 796 813 - -
Vimu5g00539 1062 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 538 627 - -
Vimu5g00539 1062 CDD PAN_AP_plant 320 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00539 Vimu-Chr5 5695327 5702281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00539 452 737 Receptor kinase-like Gene Family AT4G23190 48.276 6.10e-83 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu5g00539 PK_Tyr_Ser-Thr 2.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00539 - - pvu:PHAVU_011G149500g 1051.97