Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00538 CCAACTATCAGTGCAAATGTAAGGAGAAGATATAATGATAGAGCTGGAAGGAGAAGGTGCCACAGATTTCTCCATAGGCCATACCGTCATGTAGAAACTCCAACTGCCAGTGCTAATATAAGGAGAAGATATAATGATAGAGCTGGAAGGAGAAGGTGCCACAGAGTTCAACATAGGTCATACCGTCATGCACAACCTGTGCAAGAGATCCGATGTCACTCCAACTTTCATCCTTTAGTAACTGCTCCACTCTATAGAATTCCAACATATCCTTCAAACAATTCCTCAGTGCTTATACAAAATGCACCATTTGCAGGCAACATGCATAATCTTCCAATCTCTTATGTACAAGCTCCATCTATCGGTGATAATTCTTTAAAAACTTACTTTCTTTCTCACGTATTATTCTCTTTCTTTGTGCAAGAATTTCCTTCATATATGCTCATGGACACTGATGTGCAGGAATTTCCTTTATATATGCTCATGGAGACTGATGACATGTCATATGAGACATTTTCTAATGTTCAGGAATCTTCTTCATTAGGTGACCCTCACAATGATATGCGCTTGGACATTGATGGCATGTCATATGAGGCAAGTGAACGGATCAATGACAATTCTGAAAAGGGTTTGTCAGAAGATATTATTGTAAGACAATTGCAGACAAAAAGTTGTCTACTACCTGGAAACTTCAAGGATCAAGAGACTGATATTTGCATCATATGCCAGAAATATGTTTTACACTTTTTGGAATGTCTATGTATTTCACAGGAGGAATACAAAAATAAAGAGGAGATTGGAATTCTTCAATGCGTACATGAATACCATGTAGATTGTATAAAGAGATGGTTACATAAGAAAAATGTCTGTCCCATGTGCAAATCAAAAGCATTAACCATTATATAG 906 0.3731 PTISANVRRRYNDRAGRRRCHRFLHRPYRHVETPTASANIRRRYNDRAGRRRCHRVQHRSYRHAQPVQEIRCHSNFHPLVTAPLYRIPTYPSNNSSVLIQNAPFAGNMHNLPISYVQAPSIGDNSLKTYFLSHVLFSFFVQEFPSYMLMDTDVQEFPLYMLMETDDMSYETFSNVQESSSLGDPHNDMRLDIDGMSYEASERINDNSEKGLSEDIIVRQLQTKSCLLPGNFKDQETDICIICQKYVLHFLECLCISQEEYKNKEEIGILQCVHEYHVDCIKRWLHKKNVCPMCKSKALTII 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00538 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 229 300 IPR013083 -
Vimu5g00538 301 Pfam RING-H2 zinc finger domain 237 294 IPR024766 GO:0008270
Vimu5g00538 301 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 37 298 IPR045191 GO:0061630
Vimu5g00538 301 SUPERFAMILY RING/U-box 232 298 - -
Vimu5g00538 301 ProSiteProfiles Zinc finger RING-type profile. 239 294 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00538 Vimu-Chr5 5681260 5682891 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00538 183 298 C3H Transcription Factor Family AT2G15530 41.322 6.47e-21 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00538 K19041 - vra:106752786 204.142