Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00537 ATGTCTGAACTTCATATACGCACAGTAGTAGTAAGAAGAAGAATGGTAGTAAGAAGAAGAAGTCACCAACACAGATTTCTCCGTCAACAATATCATGAGCCAGAGATCAGAAGTCACTCCAACTTTCCTTCCTACATAACAACTTCACCATATAGAGTTCCAGAAACAACAAATCATTCAAGTTCTTCAATGCCCATACAAAATGCACCTAATATTGAAAACATGCATAATCTTCATCCTCTTGCGTTTCGTGAATTTCCTTCGCATATGTTCATGGACACTAATGGCATGTCATACGAGACACTTCATAATGTGCAAGAATTTCCTTCATTAGGTGACCCTCATAGTGATATGCGCTTGGACATTGATGGCATGTCATATGAGGAACTTCTTGAGTTAAGTGAATGGATCAATGACAACTCGAAAAGGGGTTTGTCAGAAGACATTATTACAAAACATATGCAGACCAAAAGTTATCTACTACCTGAGAACTTGGGGGATCAAGAATCTGATATTTGCATAATATGTCAGGATGAATATAAAAACAAAGAGGAGATTGGAATTCTTCAATGCGGACATGAATACCATGCAGAGTGTATAAAGAGATGGTTACATGAGAAAAATATTTGTCCCATATGCAAATCAAAAGGATTGACTATTGAATAG 666 0.3679 MSELHIRTVVVRRRMVVRRRSHQHRFLRQQYHEPEIRSHSNFPSYITTSPYRVPETTNHSSSSMPIQNAPNIENMHNLHPLAFREFPSHMFMDTNGMSYETLHNVQEFPSLGDPHSDMRLDIDGMSYEELLELSEWINDNSKRGLSEDIITKHMQTKSYLLPENLGDQESDICIICQDEYKNKEEIGILQCGHEYHAECIKRWLHEKNICPICKSKGLTIE 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00537 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 217 IPR013083 -
Vimu5g00537 221 ProSiteProfiles Zinc finger RING-type profile. 173 214 IPR001841 -
Vimu5g00537 221 SUPERFAMILY RING/U-box 163 216 - -
Vimu5g00537 221 CDD RING-H2_RNF24-like 171 215 - -
Vimu5g00537 221 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 20 218 IPR045191 GO:0061630
Vimu5g00537 221 Pfam Ring finger domain 172 214 IPR001841 -
Vimu5g00537 221 SMART ring_2 173 213 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00537 Vimu-Chr5 5677962 5679014 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00537 113 218 C3H Transcription Factor Family AT2G15530 50.000 7.03e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00537 K19041 - vra:106752786 282.722