Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00536 ATGCCTAAACTTCATATACGCACAGTGGTAGTAAGAAGAAGAATGGTAGTAAGAAGAAGAAGTCACCAGCACAGATTTCTCCGTTGGCAATACCATGAGCAAGAGATCAGAGGTCACTCCAACTCTCCTTCCTACGTAATAGCTTCACCATATAAAGTTCCAGAAACAACAAATCATTCAAGAAGTTCTTCAATGTCCATACAAAATGCACCAGTTGCAGGAAAAATGCATAATATTTCCCGTGAGGCTTTTGTTCAAGATAATGTTCCTTCATTGATTGACCCTTACAGTGATAGAATTAGAAGGAGAAGACGCCATAAATTACTCTATAGTGATATGCGGTTGGACATTGACCACATGTCATATGAGGAGCTTCTTGAGTTAGGTGAATGGATTGGAAACGTAGACAAGGGTTTGCTAGAAGACATTATTGTAAGACAAATGAGGACAAAAACTTATTTATTACCTAATGACTCAGAGGGGACAATTTCTAAGGAACGCGAATTTGATATTTGCATAATATGTGAGGATACTAGTTTAGTTGTCTTTTTTATGTACTAG 561 0.3743 MPKLHIRTVVVRRRMVVRRRSHQHRFLRWQYHEQEIRGHSNSPSYVIASPYKVPETTNHSRSSSMSIQNAPVAGKMHNISREAFVQDNVPSLIDPYSDRIRRRRRHKLLYSDMRLDIDHMSYEELLELGEWIGNVDKGLLEDIIVRQMRTKTYLLPNDSEGTISKEREFDICIICEDTSLVVFFMY 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00536 186 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 26 176 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00536 Vimu-Chr5 5667216 5668240 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00536 112 177 C3H Transcription Factor Family AT2G15530 40.909 8.30e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00536 K19041 - var:108324602 130.954