Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00534 ATGGTAACAAGAGGAATGATCATTGATTCAAATTACGTAGTAGATGTTGATGAAAATGGAACGATGAATGGAATGACACAACACCATGGACTGCAGCATCAATCTAGTCACTCTCACAATTTCATTCGGAGTAATTATTTGGATTTGGTTTGGTATCCATATCTTCCAATCATATATGTACAAGTTCCACCTTCCAATACTAATGTAAGCTCATTAGAAGAGAATATAAGAATGGCTCAACGAAGAAGAAGACATCACCACAGATTTCTCCTCCGTCGGCAATACCGTGAGCAACAGATTAGAAGGCAATACCGTGAGCAACAGATCAGAAGGCAATACCGTGAGCAACAGATTAGAAGGCACTTCAATTTTCCTTCCTACATAACTGCTTCACCATATAGAGTTCCAGAAACAACAAATCATTCAAGAAGTTCTTCAATGCCCATACAAAATACACCTTATAGAGACAACATACATAATCTTCATCCTCCTACCTTTCGTGAATTTCCTTCGTATATGCTCATGGACACTGATGACATGTCATACGAGACACTTTTTAATGTGCAAGAATTTCCTTCATTAGGTGACCCACATAGTGATATGCGTTTGGACATTGATGGCATGTCATATGAGGCAAGTATACTATATATGTATAGTTTGATGTTTTTTTCTATGCATACTAAAATCTTAGAGCTTATTGAGTTAAGTGAATTGATAAATGATAACTCGGAAAGGGGTTTGTCAGAAGACATTATTGCAAGATATATGCAGACAAAAAGTTATCTATTACCAGAGAACTTGGAGAATCATGAATATGATATTTGCATAATATGTCAGGATGAATATAAAAATAAAGAGGAAATTGGAATTCTTCAATGCGGACATGAATATCATGCAGAGTGTGTAAAGAGATGGTTACATGAGAAAAATGTTTGTCCCATGTGCAAATCAATAGGATTGACTATTGAATAG 972 0.357 MVTRGMIIDSNYVVDVDENGTMNGMTQHHGLQHQSSHSHNFIRSNYLDLVWYPYLPIIYVQVPPSNTNVSSLEENIRMAQRRRRHHHRFLLRRQYREQQIRRQYREQQIRRQYREQQIRRHFNFPSYITASPYRVPETTNHSRSSSMPIQNTPYRDNIHNLHPPTFREFPSYMLMDTDDMSYETLFNVQEFPSLGDPHSDMRLDIDGMSYEASILYMYSLMFFSMHTKILELIELSELINDNSERGLSEDIIARYMQTKSYLLPENLENHEYDICIICQDEYKNKEEIGILQCGHEYHAECVKRWLHEKNVCPMCKSIGLTIE 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00534 323 MobiDBLite consensus disorder prediction 135 157 - -
Vimu5g00534 323 SMART ring_2 275 315 IPR001841 -
Vimu5g00534 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 319 IPR013083 -
Vimu5g00534 323 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 22 320 IPR045191 GO:0061630
Vimu5g00534 323 SUPERFAMILY RING/U-box 274 318 - -
Vimu5g00534 323 Pfam Ring finger domain 274 316 IPR001841 -
Vimu5g00534 323 ProSiteProfiles Zinc finger RING-type profile. 275 316 IPR001841 -
Vimu5g00534 323 CDD RING-H2_RNF24-like 273 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00534 Vimu-Chr5 5643989 5645421 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00534 196 320 C3H Transcription Factor Family AT2G15530 39.062 2.23e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00534 K19041 - vra:106752786 250.366