Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00532 ATGGCTCAACAAAGAAGAAGACATCACCACAGATTTCTCCAGATTAGAAGGCAATACCGTGAGCAACAGATTAGAAGGCAATACCGTGAGCAACAGATCAGAAGGCAATACCGTGAGCAACAGATCAGAAGGCACTTCAATTTTCCTTCCTACGTAACTGCTTCACCATATAGAGGAGTTCCAGAAACAACAAATCATTCAAGAAGTTCTTCAATGCCCATACAAAATGCACCTAATAGAGACAACACACATAATCTTCATCCTCCTGCGTTTCGTGAATTTCCTTCGTATATGGTCATGGACAATGATGACATGTCATACGAGACACTTTTTAATGTGCAGGAATTTCCTTCTGACCCTCATAGTGATATGCGTTTGGACATTGCTGGCATGTCATATGAGGAGCTTCTTGATCTAAGTGAATTGATAAATGATAACTCGGAAAGAGGTTTGGAAAGGGGTTTGTCAGAAGACATTATTGCAAGATATATGCAGACAAAAAGTTATCTATTGCCAGAGAACTTGGGAAATCATGAATATGATATTTGCATAATATGTCAGGATGAATATAAAAATAAAGAGGAGATTGGAATTCTTCAATGCGGACATGAATATCATGCAGAGTGTGTAAAGAAATGGTTACATGAGAAAAATGTTTGTCCCCTGTGTAAATCAATAGGATTGACTATTGAGTAG 696 0.3807 MAQQRRRHHHRFLQIRRQYREQQIRRQYREQQIRRQYREQQIRRHFNFPSYVTASPYRGVPETTNHSRSSSMPIQNAPNRDNTHNLHPPAFREFPSYMVMDNDDMSYETLFNVQEFPSDPHSDMRLDIAGMSYEELLDLSELINDNSERGLERGLSEDIIARYMQTKSYLLPENLGNHEYDICIICQDEYKNKEEIGILQCGHEYHAECVKKWLHEKNVCPLCKSIGLTIE 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00532 231 MobiDBLite consensus disorder prediction 57 83 - -
Vimu5g00532 231 Pfam Ring finger domain 182 224 IPR001841 -
Vimu5g00532 231 CDD RING-H2_RNF24-like 181 225 - -
Vimu5g00532 231 ProSiteProfiles Zinc finger RING-type profile. 183 224 IPR001841 -
Vimu5g00532 231 SMART ring_2 183 223 IPR001841 -
Vimu5g00532 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 227 IPR013083 -
Vimu5g00532 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 6 228 IPR045191 GO:0061630
Vimu5g00532 231 MobiDBLite consensus disorder prediction 57 84 - -
Vimu5g00532 231 SUPERFAMILY RING/U-box 182 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00532 Vimu-Chr5 5601277 5602337 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00532 97 228 C3H Transcription Factor Family AT2G15530 39.259 4.18e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00532 K19041 - vra:106752786 245.358