Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00528 ATGTCTACGACTTCTTATTGTTCCTCAGACAGTTTAGCAGTGAGTGAATCCATCCAAGATATTAAGAACGAGACTTTGGTATCAGCAGGTGGAATTACTGAACTGGGTTTCTTCAGTCCACGAAATTCAGCAAGAAGATATTTGGGAATATGGTATACAAATGTATCCCCTTTCACTGTGGTATGGGTGGCAAACCGAAATACACCTCTTGAGAATAATTCAGGAGTTCTCAAACTCAACCAAAAAGGGGTTCTTGAGCTGCTCAATGGCACAAACAACATCGTTTGGTCATCACCCAACAGATCAAGCAATACAGTGAATGATCCAATTACTCGTCTTTTGGATTCTGGAAATTTTGTTGTGAGAAATGGAGGGGAAACAAAAGAGGATAGCATCTTGTGGCAGAGTTTTGATTATCCGGGTGATACACAGATGCCAGAAATGAAGCTTGGATGGAACCTAGAGACTGGTGTGGAAAGATATATAGCATCTTGGAAAAGTGATGAGGATCCTGCAGAGGGAGAATATGTTATAAAAGTGGATCTTAGAGGATATCCTCAAATAATAAAGTTCAAGGGAACTGATATAAAAGCAAGAGCAGGGCCATGGAATGGCTTGTCTCTGGTTGGAAATCCTATTCCAGCTCGTGGTACGTCTGCAAAATTTGTGTTCAATGAAAAAGAGGTGTATTATTGGTACAGTCTTAGTGATGAATTGGACTTCTTTGTGTTCACACTGACCCCTGCAGGCACAGGACAAAGTTGGTTTTGGACAACTGAAACAAGAACGAGGCAAGTGATCTCAAGTGGGGAGGAAGATCAATGCGAGAATTATGCCTTTTGTGGTGCAAATTCTGTATGCATTTATGACGGTAACTATCCAATTTGTGAATGCCTTAGAGGGTATGTTCCTAAATCTCCTGATGAGTGGAATATATCAATTTGGCACAATGGCTGTGTGCCAAGGAATAAATCTAACTGCACGAACATATACACAGATGGCTTCTTGAAATACACGCACATGAAGTTGCCAGACACTTCTTCCTCATGGTTTGATGCAACCATGAACCTTGATGAATGTATGAAGTTTTGCATTAGAAACTGTTCTTGTACAGCATGTGCAAATTTAGATGTTCGTGACGAAGGAAGTGGTTGTCTGCTTTGGTTTAATGATCTGGTTGACATGAGGAATTTCTCTCAATGGGGACAAGACTTTTACATCAGAGTCCCTGCTTCCGAATTAGGGATAGCTAGAAAACTTTACAGCAAGCATAAGCAGAAAAAGGAAGACCTTGAATTTCCAACTTTCGATTTTCCGGTCATTGCTAATGCTACCGAAAACTTTTCAACCAAAAACAAGCTTGGTGAAGGTGGTTTTGGACCAGTATACAAGGGCATACTGTTAGATGGACAAGAGTTAGCAGTGAAAAGACTCTCAGAGAATTCCGGACAAGGGTTAGAAGAGTTCAAAAATGAAGTTGCTTTGATTGCAAAACTTCAACACCATGAAAGCAAGAGGAAGTTGCTAGATTGGCGCATGAGATTCAACATTATCAGTGGCATTGCTCGAGGACTTGTCTATTTGCATCAAGATTCTAGACTAAGGATTATTCACAGAGATCTTAAAACTAGCAATATTTTACTAGACACAAATTTGGATCCAAAAATAGCAGACTTTGGCTTGGCTCGATCATTTTTGGGAGATCAAGTTGAGGGAAAGACTCATAGGGTGGCTGGAACATAG 1743 0.4039 MSTTSYCSSDSLAVSESIQDIKNETLVSAGGITELGFFSPRNSARRYLGIWYTNVSPFTVVWVANRNTPLENNSGVLKLNQKGVLELLNGTNNIVWSSPNRSSNTVNDPITRLLDSGNFVVRNGGETKEDSILWQSFDYPGDTQMPEMKLGWNLETGVERYIASWKSDEDPAEGEYVIKVDLRGYPQIIKFKGTDIKARAGPWNGLSLVGNPIPARGTSAKFVFNEKEVYYWYSLSDELDFFVFTLTPAGTGQSWFWTTETRTRQVISSGEEDQCENYAFCGANSVCIYDGNYPICECLRGYVPKSPDEWNISIWHNGCVPRNKSNCTNIYTDGFLKYTHMKLPDTSSSWFDATMNLDECMKFCIRNCSCTACANLDVRDEGSGCLLWFNDLVDMRNFSQWGQDFYIRVPASELGIARKLYSKHKQKKEDLEFPTFDFPVIANATENFSTKNKLGEGGFGPVYKGILLDGQELAVKRLSENSGQGLEEFKNEVALIAKLQHHESKRKLLDWRMRFNIISGIARGLVYLHQDSRLRIIHRDLKTSNILLDTNLDPKIADFGLARSFLGDQVEGKTHRVAGT 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00528 580 Gene3D Phosphorylase Kinase; domain 1 412 501 - -
Vimu5g00528 580 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 326 409 - -
Vimu5g00528 580 ProSiteProfiles EGF-like domain profile. 271 308 IPR000742 -
Vimu5g00528 580 Gene3D Hepatocyte Growth Factor 326 406 - -
Vimu5g00528 580 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 4 137 - -
Vimu5g00528 580 Pfam D-mannose binding lectin 59 166 IPR001480 -
Vimu5g00528 580 Pfam PAN-like domain 331 395 IPR003609 -
Vimu5g00528 580 FunFam Os07g0541700 protein 494 580 - -
Vimu5g00528 580 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 570 - -
Vimu5g00528 580 CDD PAN_AP_plant 324 410 - -
Vimu5g00528 580 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 171 IPR036426 -
Vimu5g00528 580 CDD B_lectin 23 140 IPR001480 -
Vimu5g00528 580 SUPERFAMILY Protein kinase-like (PK-like) 434 580 IPR011009 -
Vimu5g00528 580 Gene3D - 5 137 IPR036426 -
Vimu5g00528 580 Pfam Protein kinase domain 515 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00528 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 536 548 IPR008271 GO:0004672|GO:0006468
Vimu5g00528 580 ProSiteProfiles Bulb-type lectin domain profile. 11 134 IPR001480 -
Vimu5g00528 580 SMART blect_4 17 140 IPR001480 -
Vimu5g00528 580 ProSiteProfiles PAN/Apple domain profile. 327 410 IPR003609 -
Vimu5g00528 580 Pfam S-locus glycoprotein domain 199 306 IPR000858 GO:0048544
Vimu5g00528 580 SMART serkin_6 448 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00528 580 SMART ntp_6 330 409 IPR003609 -
Vimu5g00528 580 Gene3D Transferase(Phosphotransferase) domain 1 502 580 - -
Vimu5g00528 580 ProSiteProfiles Protein kinase domain profile. 448 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00528 Vimu-Chr5 5558873 5561218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00528 423 580 Receptor kinase-like Gene Family AT4G23250 51.795 7.55e-52 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu5g00528 S_locus_glycop 3.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00528 - - gmx:100815430 885.945