Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00527 ATGCCTCCTGAGTATGCTGCACGTGGACATTTTTCAGTGAAATCAGATGTGTTTAGTTATGGTGTGATAGTACTAGAGATTGTAAGTGGGAAGAAAAACAGGGAATTTTCAGACCCAGAAACCAACAATAATCTTCTTGGCCATGCATGGAGATTATGGACTGAAGAGAGAGCACTCGAACTGCTTGATGAATTGATAGGAGAACAATGCCTAGAGTCTGAAGTCGCTCGATGCATACAGGTCGGACTATTGTGTGTGCAACAAAGACCAAACGATAGACCAGACATGTCATCGGTGGTTCTAATGTTGAATGGTGAAAAATCATTACCAAAGCCAAAGGTTCCTGGCTTTTACACTGAATCAGATGTTACAACCGAAACAAATTCTTCATCAGAAAATCACACACTATGCTCAGTTAATGAGCTTTCCATCACAATGATAGATGCAAGATAG 453 0.4062 MPPEYAARGHFSVKSDVFSYGVIVLEIVSGKKNREFSDPETNNNLLGHAWRLWTEERALELLDELIGEQCLESEVARCIQVGLLCVQQRPNDRPDMSSVVLMLNGEKSLPKPKVPGFYTESDVTTETNSSSENHTLCSVNELSITMIDAR 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00527 150 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 149 - -
Vimu5g00527 150 Gene3D Transferase(Phosphotransferase) domain 1 1 114 - -
Vimu5g00527 150 ProSiteProfiles Protein kinase domain profile. 1 109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00527 150 SUPERFAMILY Protein kinase-like (PK-like) 1 122 IPR011009 -
Vimu5g00527 150 Pfam Protein tyrosine and serine/threonine kinase 1 101 IPR001245 GO:0004672|GO:0006468
Vimu5g00527 150 Pfam Domain of unknown function (DUF3403) 108 150 IPR021820 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00527 Vimu-Chr5 5558256 5558792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00527 1 150 Receptor kinase-like Gene Family AT4G23140 47.097 5.63e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu5g00527 PK_Tyr_Ser-Thr 9.3e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00527 - - gmx:100784066 259.225