Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00523 ATGGCAGCAACATTAATGGCAGCCTCTGCAAGCTCTGGCACTGTCCTTAAACCAACACCTTTCCTTGGCCAAAGTAGGGCAACCAATGCCAACCCTCTTAGAGATGTTGTCTCCATGGGACCTGGGAAATACACCATGGGAAATGAATTGTGGTATGGTCCAGACAGAGTGAAATACTTGGGACCCTTTTCAGCTCAGACTCCCTCATATCTGACTGGAGAATTCCCAGGGGACTATGGATGGGACACTGCTGGATTGTCTGCTGATCCTGAAGCATTTGCCAAGAACAGGGCTCTTGAGGTGATCCATGGGCGTTGGGCTATGCTTGGAGCACTAGGATGCATAACCCCAGAAGTGCTTGAGAAGTGGCTGAGAGTGGAATTCAAGGAGCCAGTTTGGTTCAAAGCAGGAGCTCAAATATTCTCAGAAGGTGGCCTAGACTATCTGGGGAACCCTAACCTTGTGCATGCACAAAGCATCTTGGCAGTGCTAGGGTTCCAAGTTGTGCTTATGGGTCTTGTTGAAGGATTTCGGATCAATGGTCTTCCTGGTGTGGGAGAGGGCAATGATCTCTACCCTGGTGGCCAATACTTTGACCCTCTTGGCCTTGCTGATGACCCTGTCACTTTTGCTGAGCTCAAGGTTAAGGAGATCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTTGGCTTCTTTGTCCAAGCCATTGTCACTGGGAAAGGACCACTTGAGAACCTTTTGGATCACCTTGACAACCCTGTGGCTAACAATGCTTGGGTCTATGCCACCAAGTTTGTGCCTGGCTCTTAG 810 0.4938 MAATLMAASASSGTVLKPTPFLGQSRATNANPLRDVVSMGPGKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLRVEFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00523 269 Pfam Chlorophyll A-B binding protein 68 235 IPR022796 -
Vimu5g00523 269 SUPERFAMILY Chlorophyll a-b binding protein 50 266 - -
Vimu5g00523 269 Gene3D Chlorophyll a/b binding protein domain 58 262 - -
Vimu5g00523 269 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 13 268 IPR001344 GO:0009765|GO:0016020
Vimu5g00523 269 FunFam Chlorophyll a-b binding protein, chloroplastic 58 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00523 Vimu-Chr5 5464433 5466571 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00523 1 268 Chloroplast and Mitochondria Gene Families AT2G05070 67.509 3.46e-123 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00523 K08914 - cave:132175650 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00523 5 5464433 5466571 Vimu5g00523 5 5464433 5466571 ECH
Vimu5g00523 5 5464433 5466571 Vimu4g01154 4 10174802 10177521 PCT