Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00517 ATGACCGGCAAAGAAATCCTTCATAAGATGAAGGAAAAAGTTTTGGGGCCATCTGATTCTGATTCAGGTAAAGGAAAGAGCAAGATGAAGAAGCACATTACTCATGGCTTTCACTTGGTAAAGGGAAGATCTGGTCATGCCATGGAAGACTATGTTGTTGCTCAGTTTAAGCAAGTTGATAACAATGAATTGGGCTTATTTGCTATATTCGATGGTCACTCAGGTGAACTGGGTCGAGGGGGTTCAACTGCAGTTACTGCAATATTGATCAACTGTCAGAAGTTAGTAGTGGCCAATATTGGAGATTCCAGGGCTGTCTTGTGCCAGAATGGCCAGGCCAAACAACTATCAGTGGATCATGAACCAAGTGTAGAAAGTGAGGATATAAAAAACAGAGGTGGTTTTGTGTCAAACTTCCCAGGTACCAATCACATTTTAAAATGTTGTATGGTTTTTTACCTTCATCTTCATTCAGTGTTGCACAATATCCGAGGTTTTAGTTTTACTTGTTAG 513 0.4035 MTGKEILHKMKEKVLGPSDSDSGKGKSKMKKHITHGFHLVKGRSGHAMEDYVVAQFKQVDNNELGLFAIFDGHSGELGRGGSTAVTAILINCQKLVVANIGDSRAVLCQNGQAKQLSVDHEPSVESEDIKNRGGFVSNFPGTNHILKCCMVFYLHLHSVLHNIRGFSFTC 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00517 170 Pfam Protein phosphatase 2C 79 144 IPR001932 -
Vimu5g00517 170 PANTHER PROTEIN PHOSPHATASE 80 142 IPR015655 GO:0004722|GO:0006470
Vimu5g00517 170 CDD PP2Cc 35 138 IPR001932 -
Vimu5g00517 170 ProSiteProfiles PPM-type phosphatase domain profile. 1 170 IPR001932 -
Vimu5g00517 170 Gene3D - 16 77 IPR036457 -
Vimu5g00517 170 MobiDBLite consensus disorder prediction 8 28 - -
Vimu5g00517 170 MobiDBLite consensus disorder prediction 8 27 - -
Vimu5g00517 170 Gene3D - 78 166 IPR036457 -
Vimu5g00517 170 SUPERFAMILY PP2C-like 29 144 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00517 Vimu-Chr5 5389971 5392912 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00517 1 141 PP2C-type Phosphatase Gene Family AT3G15260 59.067 7.18e-69 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00517 K17506 - gmx:100787942 238.039