Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00494 ATGACTTCGGGAATTTCCATTCCACCTGATCTTCTCTTCACAATAAAAGGGAGCTACTTTGATTCCCCTCTAAGAACTGATGGTAAGAAATGGAGATGCTCCAAAGAGGCATACCCATATTCAAATTACTGTGAGAGGTACATGCATAGAGGGAAAAATCGTTCAAGAAAGCTTGTGGAAGTTTTGAAAACAACACCATCAACAAACACAAATGCTTCAACTCACCAACAAATCTCATCAATCACCAAAATCAATACTCTTTCACCTCTTGCATCATCTGAATCACACCAACACCACCCTCCACACCATGCCTTCTTTCAAGCGGACCAAATTCTCCGCGATACTGCCACCGAGGACGACCAGGCCTTCGATCCCCACCTCACGTCGTCGAGTCCACCAGCCTCAAACTTCTCGGTCTCTTCCTCCAATGCGCCGAGTGCATCGCCATGGATAAACTCGACTTCTCCAACGACCTCTTCCCGAAGATGGCCAAATGCACATTCACGTACGTCCATAACACCATGTTGCATCGTCGTCGTCTTCACAACACCACTGGAACCGGATACGAAGCAAAAACGTCTTGTGGATCCGGATACAAAGAAGCCTGTATCTGGATACCCTTCCTTCGCAAAAAATGGAAAACGTGGATCCAGATACGCTGTTTACTAG 669 0.4634 MTSGISIPPDLLFTIKGSYFDSPLRTDGKKWRCSKEAYPYSNYCERYMHRGKNRSRKLVEVLKTTPSTNTNASTHQQISSITKINTLSPLASSESHQHHPPHHAFFQADQILRDTATEDDQAFDPHLTSSSPPASNFSVSSSNAPSASPWINSTSPTTSSRRWPNAHSRTSITPCCIVVVFTTPLEPDTKQKRLVDPDTKKPVSGYPSFAKNGKRGSRYAVY 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00494 222 PANTHER GROWTH-REGULATING FACTOR 5 2 163 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vimu5g00494 222 Pfam WRC 25 60 IPR014977 -
Vimu5g00494 222 MobiDBLite consensus disorder prediction 122 166 - -
Vimu5g00494 222 ProSiteProfiles WRC domain profile. 17 61 IPR014977 -
Vimu5g00494 222 MobiDBLite consensus disorder prediction 190 222 - -
Vimu5g00494 222 MobiDBLite consensus disorder prediction 121 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00494 Vimu-Chr5 5070293 5071028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00494 1 60 GRF Transcription Factor Family AT3G13960 40.659 1.23e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00494 - - gmx:100814271 143.665