Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00471 ATGGTGAAGTTCAACTTGGTCATGATTTACTTTTCTGCCATGTTATATGCTGTTACTGCATTGAACACTGATGGGGTGGCTCTTCTGTCACTCCAGAAGCATTGGACATTTGTTCATACTTCCATAAACTTGAGTTGGAATGCTTCTGATTCCACTCCATGCTCTTGTTTAGGAGTCCAGTGTGACAATAACCATAGTACAATCTATCTTAACCTCTCTGGAAACTCAATTTCAGGTCTTTTGGGACCTGAAATAGGACACTTGAGTCACTTGCAAACACTTGATTTGTCCTCAAACAACTTCTCAGGGAGCATACCTCCTGAGTTAGGAAATTGTACTCTGCTTCAGAACCTGGACCTTTCTTATAACAGTATCACAGGAAACATACCTGATAGTTTGAGAAACTTGCAGAATTTAGTCTCTTTCAGTAGTATGTACAATGGGATAACTGGTCAAATTCCTGAGTTCTTGTTTCAACTTCAACACTTGGAAGATCTTCTCCTGAACCGAAACTCTTTGTCTGGTTCCATTCCAATGAATGTTGGGAATGGTACAGAAATTGTGACACTGTATCTGGATCGTAATCAGTTGTCAGGAATGATTCCACCGTCCATTGGAAACTGCAGTAAATTAGTGGAGCTGTATTTGGACTATAACCAGTTTCATGGAGTTCTACCTGATAGTATTAACAATCTTCAAAGTGTTGTTAAGTTGAGTTTCAGTAATAATAGACTTGAGGGTACCATTCCCTTACTGGGATCTAGCACATGTAAAAGTTTGCAATATCTAGACCTGTCAGGGAATAAATTTAGTGGAGGCATACCTTCAACCTTGGGGAATTGTAGTGGATTGACAGAAATTTATGCTTTAAACACAAGTTTAGGAGGAAGCATTCCATCATCCTTAGGCCAATTAATACAACTTTCTGTTCTTCGTCTTGAAACCAATCATTTGTCTGGTCAAATACCTTCAGAAATTGGTAATTGTAGATCATTACAATACTTGATGTTGAATAACAATGAACTTGAGGGAGAGATTCCAAGTGAATTAGGAAAGCTAACTCAGTTGCAAGATCTTAGACTTCATTTCAACAATTTGACAGGTGGAATTCCATTGAGCATTTGGAAAATTTCCAGCCTTCAGCAACTGCATGTGTATTACAATAACCTTTCTGGTGAGGTGCCTTTAGAGTTGACAGAACTCAAACAACTGAGAAAACTTGGCTTATACCACAATCAGTTCTCTGGAGTCATTCCTCAAAAGTTAGGAATCAATAGCAGTTTAGTGGAGTTGGATCTCTCATATAATCTTTTCACTGGAAACATCCCAGCTAATCTCTGCTTTGGACAACAATTACTTAGGCTAATACTGGCTTCAAATCAATTGCAAGGTGGTATTCCTCCTGATATCGGAAGATGCACAACACTTACTAGGTTAAGGCTTGATGGAAACAACTTAACTGGACCTTTACCTGATTTTACAAGCAATTGTAGTCTCACCTACATGGACTTGAGTGGGAACAATATCAATGGAACAATTCCATCAAGTTTGGGAAACTGCATAAATCTTACTACTGTTATTTTTTCTCACAACAATCTTTCTGGGATCATACCCTTTGGGCTAGGAAACCTTGTGAACCTTCAAAGGTTGAACCTTTCTCAAAACAAATTAGGAGGTCCTTTACCACATGAGCTTTCAAACTGTAAGAAAATGCAGTACTTTGATGCTGGATTCAATTCTCTAAATGGTTCATTCCCATCTAGTTTGAGAACTTGGACAGGGTTGGCAACATTGAATTTAAGGGACAATCATCTCACTGGGGGTATCCCAACTTTCTTATCAGAATTTGAAGGCCTTTATGATCTACATCTTGGGGGAAATGATTTTGGAGGCCAAATTCCTAGATCAATTGGTGGGTTGAAAAATCTTTTTTATGAGTTGAATCTAAGTGCTAATGGGCTGACAGGTGAAATTCCTCCTGAGATTGGAAAACTTACATTGCTGCAAAGCCTGGATATTTCTCTCAACAATCTGACTGGAAAAATTGATGTTCTTGAAGATCTCTCTTCATTGATTGAACTCAATATTTCATACAATTCTTTTTCTGGCCCTCTTCCAGACACACTGGTGAACTTGCTCCATTCTTCTCCCTCATCATTCTTGGGAGTTCCTGGCTTATGTCTTAGATGTTTTCCATCAAATTGTTCCAAAAGTAACATCTTGAAGCCATGTGATGAGAACAGCACTACACATCGAAAAGGGCTGAGTAAAATTAAAGTTATGTTGATAGCAGTTGGATCTGCACTACTGATATCAATTCTGTTACTTGGTCTTGTTTACCTGATATACTACAAGCAAGATGTGAAGATCTTTCCCGAACAGCGATCATCAACATTGCTCAAGAAGGTGATGAAGGTGACAGAGAACCTAAATGATAGGCATATTATTGGGAGAGGAGCTCATGGAGTTATTTACAAAGTTGAATTCAATAACAAAAAACTGATCACTAGCATGACCGCAGAGATTGAAACCACTGGGAAGATAAGGCATAGAAATCTAGTGAGAATAAAAAACTTCTGGTTAAAAAAGGACTTTGGTCTAATCATGTACAAGTACATGGAAAATGGAAGTCTTCATGATCTTCTGCATGAGAAGTTTCCACAACCACCTTTAGAGTGGAATGTTCGCTATACAATTGCAGTTGGCATTGCACATGGACTTGAATACCTCCATCATGATTGTGAACCTTTCATAGTGCACAGAGACATCAAACCAAAGAATATACTTTTGAATTCTGATATGGAACCTCGTATTTCTGATTTTGGCATTGCAAGGCTTCTAGACCATTCCTCTTATTCATTGCAATCTGTGTCTGTTCCTGGTACAGTAGGGTACATTGCACCAGTGATGAGTAGGAAGAGTGATGTGTATAGTTATGGAGTGCTTTTGCTAGAGCTGATATGCAGAAAGAAGGTGCTAGATGATCCTTCATTTATGGAAGGAACAGATCTTGTGGGATGGGTCAGATGTATCTGGGAAAAAACAAAAGGCATTGATGGAATTGTTGACTCAGGGCTTAAAGAGGAACTTTTGGATTCAAATTTGAGGGAGCAAGTTGAACAATTGCTCTTGATGGCTTTGAGATGTACTGATGAGCATCCAGGTGAGAGACCAACAATGAGAGAAGTTGTCAAGGAGCTGATATTTAGATGCAAAGATATTGACATGAAGAAATGTTGA 3240 0.3861 MVKFNLVMIYFSAMLYAVTALNTDGVALLSLQKHWTFVHTSINLSWNASDSTPCSCLGVQCDNNHSTIYLNLSGNSISGLLGPEIGHLSHLQTLDLSSNNFSGSIPPELGNCTLLQNLDLSYNSITGNIPDSLRNLQNLVSFSSMYNGITGQIPEFLFQLQHLEDLLLNRNSLSGSIPMNVGNGTEIVTLYLDRNQLSGMIPPSIGNCSKLVELYLDYNQFHGVLPDSINNLQSVVKLSFSNNRLEGTIPLLGSSTCKSLQYLDLSGNKFSGGIPSTLGNCSGLTEIYALNTSLGGSIPSSLGQLIQLSVLRLETNHLSGQIPSEIGNCRSLQYLMLNNNELEGEIPSELGKLTQLQDLRLHFNNLTGGIPLSIWKISSLQQLHVYYNNLSGEVPLELTELKQLRKLGLYHNQFSGVIPQKLGINSSLVELDLSYNLFTGNIPANLCFGQQLLRLILASNQLQGGIPPDIGRCTTLTRLRLDGNNLTGPLPDFTSNCSLTYMDLSGNNINGTIPSSLGNCINLTTVIFSHNNLSGIIPFGLGNLVNLQRLNLSQNKLGGPLPHELSNCKKMQYFDAGFNSLNGSFPSSLRTWTGLATLNLRDNHLTGGIPTFLSEFEGLYDLHLGGNDFGGQIPRSIGGLKNLFYELNLSANGLTGEIPPEIGKLTLLQSLDISLNNLTGKIDVLEDLSSLIELNISYNSFSGPLPDTLVNLLHSSPSSFLGVPGLCLRCFPSNCSKSNILKPCDENSTTHRKGLSKIKVMLIAVGSALLISILLLGLVYLIYYKQDVKIFPEQRSSTLLKKVMKVTENLNDRHIIGRGAHGVIYKVEFNNKKLITSMTAEIETTGKIRHRNLVRIKNFWLKKDFGLIMYKYMENGSLHDLLHEKFPQPPLEWNVRYTIAVGIAHGLEYLHHDCEPFIVHRDIKPKNILLNSDMEPRISDFGIARLLDHSSYSLQSVSVPGTVGYIAPVMSRKSDVYSYGVLLLELICRKKVLDDPSFMEGTDLVGWVRCIWEKTKGIDGIVDSGLKEELLDSNLREQVEQLLLMALRCTDEHPGERPTMREVVKELIFRCKDIDMKKC 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00471 1079 Gene3D Ribonuclease Inhibitor 181 253 IPR032675 -
Vimu5g00471 1079 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 576 1062 - -
Vimu5g00471 1079 SUPERFAMILY L domain-like 43 198 - -
Vimu5g00471 1079 SUPERFAMILY Protein kinase-like (PK-like) 794 1070 IPR011009 -
Vimu5g00471 1079 SUPERFAMILY RNI-like 146 488 - -
Vimu5g00471 1079 ProSitePatterns Serine/Threonine protein kinases active-site signature. 918 930 IPR008271 GO:0004672|GO:0006468
Vimu5g00471 1079 SMART serkin_6 810 1069 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00471 1079 Pfam Leucine rich repeat 498 557 IPR001611 GO:0005515
Vimu5g00471 1079 Pfam Leucine rich repeat 210 270 IPR001611 GO:0005515
Vimu5g00471 1079 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 57 254 - -
Vimu5g00471 1079 Gene3D Transferase(Phosphotransferase) domain 1 873 1076 - -
Vimu5g00471 1079 Pfam Leucine Rich repeat 87 103 IPR001611 GO:0005515
Vimu5g00471 1079 Gene3D Ribonuclease Inhibitor 451 742 IPR032675 -
Vimu5g00471 1079 FunFam Leucine-rich repeat receptor protein kinase EMS1 255 348 - -
Vimu5g00471 1079 Coils Coil 668 688 - -
Vimu5g00471 1079 Pfam Leucine Rich Repeat 115 136 IPR001611 GO:0005515
Vimu5g00471 1079 Gene3D Phosphorylase Kinase; domain 1 782 872 - -
Vimu5g00471 1079 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 450 736 - -
Vimu5g00471 1079 Gene3D Ribonuclease Inhibitor 346 450 IPR032675 -
Vimu5g00471 1079 Gene3D Ribonuclease Inhibitor 21 180 IPR032675 -
Vimu5g00471 1079 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 873 1078 - -
Vimu5g00471 1079 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 349 446 - -
Vimu5g00471 1079 SUPERFAMILY L domain-like 466 714 - -
Vimu5g00471 1079 SMART LRR_typ_2 640 665 IPR003591 -
Vimu5g00471 1079 SMART LRR_typ_2 353 377 IPR003591 -
Vimu5g00471 1079 SMART LRR_typ_2 401 425 IPR003591 -
Vimu5g00471 1079 SMART LRR_typ_2 305 329 IPR003591 -
Vimu5g00471 1079 SMART LRR_typ_2 257 281 IPR003591 -
Vimu5g00471 1079 SMART LRR_typ_2 208 231 IPR003591 -
Vimu5g00471 1079 SMART LRR_typ_2 544 568 IPR003591 -
Vimu5g00471 1079 SMART LRR_typ_2 688 711 IPR003591 -
Vimu5g00471 1079 SMART LRR_typ_2 160 184 IPR003591 -
Vimu5g00471 1079 SMART LRR_typ_2 88 112 IPR003591 -
Vimu5g00471 1079 Pfam Protein kinase domain 828 1066 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00471 1079 ProSiteProfiles Protein kinase domain profile. 810 1069 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00471 1079 Gene3D Ribonuclease Inhibitor 254 345 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00471 Vimu-Chr5 4707651 4712111 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00471 12 1067 Receptor kinase-like Gene Family AT1G73080 48.718 0.0 944
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu5g00471 Pkinase 5.5e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00471 - - qsu:112010432 1222.22