Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00440 ATGAGCAGAGATTTCAAAGTTAAATTGGGTGAAGGAGGTTTTGGATCTGTATACAAAGGAAAACTTCAAAGTGGGCCAGAAATAGCCATAAAGATGTTGAAAAAATCGAAAGCTGATGGAGAAGAGTTCATTAATGAAGTGGCTAGTATTGGAAGAATACATCATGTAAATGTGGTGCATCTTATTGGATATTGTGCTGAAGGAGAAAACCGTGCTCTGGTTTATGAATACATGACAAATGGTTCGTTGGATAAACACATCTTCTCTAAAAGGGAAAGTGTCCCTTTAAGTTATGAGAAAACATATGAAATATCTCTTGGCATAGCTCGTGGGATTGCTTATCTTCATCAAGGTTGTGATGTGCAAATTCTACATTTTGATATTAAGCCTCATAATATTCTTCTAGATGATAATTTCATTCCAAAGGTTTCAGATTTCGGACTTGCAAAGTTGTATCCTGTCAAAGATATGTCTATTGCTTTAACTAAAGCTAGAGGAACTTTGGGTTACATGGCTCCAGAATTATTCTACAATAATATTGGTGGAGTATCAAATAAGGCTGATGTATATAGTTTTGGGATGCTTTTGATGGAAATGGGAAGTAGGAGAAGGAACTCAAATCCTCATGCAGAACATTCAAGCCAACAGTACTTCCCCTTTTGGATCTATGATCAAATTAAAGATGAAAAAGATACTCAAATAGAAGATGCCTCAGAAGAGGATAAGATTTTGGTGAAAAGAATGTATGTAGTTGCGCTTTGGTGTATACAATTGAATCCAAATGACCGTCCTTCAATGAAGAGAGTTGTGGATATGTTGGAAGAAAGAGTTGAAAGTCTTGAAATGCCTCCTAAGCCTGTTTATTATCCCCATGAAACAATTGAACATGATCACGGAGACAACTCAAACCAAGCATCATGGAGTAGTTCAACCAGTTCTAGCAAAATTCTTGGCAAAACTAACACTAATCATCCATGGGAGAGCAATGCTTAA 993 0.3635 MSRDFKVKLGEGGFGSVYKGKLQSGPEIAIKMLKKSKADGEEFINEVASIGRIHHVNVVHLIGYCAEGENRALVYEYMTNGSLDKHIFSKRESVPLSYEKTYEISLGIARGIAYLHQGCDVQILHFDIKPHNILLDDNFIPKVSDFGLAKLYPVKDMSIALTKARGTLGYMAPELFYNNIGGVSNKADVYSFGMLLMEMGSRRRNSNPHAEHSSQQYFPFWIYDQIKDEKDTQIEDASEEDKILVKRMYVVALWCIQLNPNDRPSMKRVVDMLEERVESLEMPPKPVYYPHETIEHDHGDNSNQASWSSSTSSSKILGKTNTNHPWESNA 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00440 330 Gene3D Phosphorylase Kinase; domain 1 9 78 - -
Vimu5g00440 330 MobiDBLite consensus disorder prediction 284 330 - -
Vimu5g00440 330 FunFam PR5-like receptor kinase 78 285 - -
Vimu5g00440 330 Gene3D Transferase(Phosphotransferase) domain 1 79 283 - -
Vimu5g00440 330 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Vimu5g00440 330 SMART serkin_6 3 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00440 330 ProSiteProfiles Protein kinase domain profile. 3 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00440 330 FunFam serine/threonine-protein kinase PBS1-like 1 77 - -
Vimu5g00440 330 PIRSF ILK 2 283 - -
Vimu5g00440 330 SUPERFAMILY Protein kinase-like (PK-like) 8 274 IPR011009 -
Vimu5g00440 330 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Vimu5g00440 330 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 298 IPR045874 GO:0004672
Vimu5g00440 330 MobiDBLite consensus disorder prediction 300 330 - -
Vimu5g00440 330 Pfam Protein kinase domain 6 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00440 Vimu-Chr5 4296405 4297397 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00440 1 330 Receptor kinase-like Gene Family AT4G18250 47.788 8.04e-103 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu5g00440 Pkinase 7.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00440 - - pvu:PHAVU_011G197500g 591.267