Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00439 ATGGCCAGTGTGGCTATCATTATTGTGCTATTCCAGCAAACCCACGGTGCCCAGGATCGTCCATTGTGTGCTCCTTCTTCGTGTGGAAAAATTCGCAACATAAGTTACCCTTTCCGACTCAAAGGCGATTCACCTGGTTGCGGCCTCCCAAGGTACGAATTAGATTGCGTAAAGAATGTGACAGTTTTCACCTTGTTTTCAGGGAAATACCATGTGCAGAATATCGATTACGAGACATTCAAGATCCAATTGACTGATGCAGGTGTTGTGGAGGACACTGCTTGCTCCATTCCTCGCTATTCCATCTTTTCACAGAACTTCGCTTACATTGGTGGTGCTAACAATTACGCGACTGATCCACTAACTTTCTGGAATGGGAATGGGGTTTCTGATACTCCTCCGTCTGTAGCGTTTCTAAACTGTACTGATCCAGTAACCGATGATCCTCGATACGTGGAAGTGAATGGCATGCTTTGTGATTCTAGAGGTCATGTCTATGCTGTTCTTCATTCCAGTGAATTCAAAATGAGGGACATCAAGGTTGGGTGCCATTTAATAGCTGCTACCTTTGCAAACTGGAACAATGGCACCAACGTTTCGTATGTTGATATCCACGAGTGGCTGCTTAATGGGTTTTGGATGTCTTGGGCACTAGTTAGATGTATAGACCAATGTGGAAAGGGTGTGGGATGCTTCATCAATCAAACTACAAATCAAATCGGATGTTATCAGGACTATTGCCATGTTATGCAGTTTGACTTTGGAAAAGGAAAGTGCGGCATTCAGCACCAGATTTTTGGATACGTAGCTGCAATTCCTATCTATATAGCACTGGATGGAGATCTCATTTTGGTAGCCCCTATTCTAATATTTGTGGCAGCCAGGTTTCTATTTGGATTGGCACTTTTGCTTGCACTATTTATCCATACGTGGCGACGTAGGCATTACTCAATGTATGAAAACATTGAAACGTTTTTGCTACACAATAATCTAAATCCTATTAGGTACGGATATAGAGAAATTAAGAAAATGAGCAGAGATTTCAAAGTTAAATTGGGTGAAGGAGGTTTTGGATCTGTATACAAAGGAAAACTTCAAAGTGGGCCAGAAATAGCCATTAAGATGTTGAAAAAAACGAAAGCTGATGGAGAAGAGTTCATTAATGAAGTGGCTAGTATTGGAAGAATACATCATGTAAATGTGGTACATCTTATTGGATATTGTGCTGAAGGAGAAAACCGTGCTTTGGTTTATGAATACATGACAAATGGTTCGTTGGATAAACACATCTTCTCCAAAAAGGAAAGTGTCCCTTTAAGTTATGAGAAAACATATGAAATATCTCTTGGCATAGCTCGTGGAATTGCTTATCTTCATCAAGGTTGTGATGTGCAAATTCTACATTTTGATATTAAGCCTCATAATATTCTTCTAGATGATAACTTCATTCCAAAGGTTTCAGATTTCGGACTTGCAAAGTTGTATCCTGTCAAAGATAAGTCTATTGCTTTAACTAAAGCTAGAGGAACTTTGGGTTACATGGCTCCAGAATTATTCTACAATAATATAGGTGGAGTATCAAATAAGGCTGATGTATATAGTTTTGGGATGCTTTTGATGGAAATGGGAAGTAGGAGAAGGAACTCAAATCCTCATGCAGAACATTCAAGCCAACAGTACTTCCCCTTTTGGATCTATGATCAAATTAAAGATGAAAAAGATACTCAAATAGAAGATGCCTCAGAAGAGGATAAGATTTTGGTGAAAAAAATGTATGTAGTTGCGCTTTGGTGTATACAACTGAATCCAAATGACCGTCCTTCAATGAAGAGAGTTGTGGATATGTTGGAAGAAAGAGTTGAAAGTCTTGAAATGCCTCCTAAGCCTGTTTATTATCCCCATGAAACAATTGAACATGATCGCGGAGAGAACTCAAACCAAGCATCATGGAGTGGTTCAACCAGTTCTAGCAATAATCTTGGCAAAACTAACACTAATCATCCATGGCAGAGTAATGCTTAA 2022 0.3947 MASVAIIIVLFQQTHGAQDRPLCAPSSCGKIRNISYPFRLKGDSPGCGLPRYELDCVKNVTVFTLFSGKYHVQNIDYETFKIQLTDAGVVEDTACSIPRYSIFSQNFAYIGGANNYATDPLTFWNGNGVSDTPPSVAFLNCTDPVTDDPRYVEVNGMLCDSRGHVYAVLHSSEFKMRDIKVGCHLIAATFANWNNGTNVSYVDIHEWLLNGFWMSWALVRCIDQCGKGVGCFINQTTNQIGCYQDYCHVMQFDFGKGKCGIQHQIFGYVAAIPIYIALDGDLILVAPILIFVAARFLFGLALLLALFIHTWRRRHYSMYENIETFLLHNNLNPIRYGYREIKKMSRDFKVKLGEGGFGSVYKGKLQSGPEIAIKMLKKTKADGEEFINEVASIGRIHHVNVVHLIGYCAEGENRALVYEYMTNGSLDKHIFSKKESVPLSYEKTYEISLGIARGIAYLHQGCDVQILHFDIKPHNILLDDNFIPKVSDFGLAKLYPVKDKSIALTKARGTLGYMAPELFYNNIGGVSNKADVYSFGMLLMEMGSRRRNSNPHAEHSSQQYFPFWIYDQIKDEKDTQIEDASEEDKILVKKMYVVALWCIQLNPNDRPSMKRVVDMLEERVESLEMPPKPVYYPHETIEHDRGENSNQASWSGSTSSSNNLGKTNTNHPWQSNA 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00439 673 ProSiteProfiles Protein kinase domain profile. 346 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00439 673 Gene3D Phosphorylase Kinase; domain 1 323 420 - -
Vimu5g00439 673 FunFam serine/threonine-protein kinase PBS1-like 316 420 - -
Vimu5g00439 673 PANTHER RUST RESISTANCE KINASE LR10-RELATED 319 639 IPR045874 GO:0004672
Vimu5g00439 673 Gene3D Transferase(Phosphotransferase) domain 1 421 626 - -
Vimu5g00439 673 SUPERFAMILY Protein kinase-like (PK-like) 333 617 IPR011009 -
Vimu5g00439 673 MobiDBLite consensus disorder prediction 643 673 - -
Vimu5g00439 673 MobiDBLite consensus disorder prediction 627 673 - -
Vimu5g00439 673 SMART serkin_6 346 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00439 673 Pfam Protein kinase domain 349 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00439 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Vimu5g00439 673 Pfam Wall-associated receptor kinase galacturonan-binding 23 86 IPR025287 GO:0030247
Vimu5g00439 673 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Vimu5g00439 673 CDD STKc_IRAK 352 618 - -
Vimu5g00439 673 FunFam PR5-like receptor kinase 421 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00439 Vimu-Chr5 4284423 4287261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00439 23 637 Receptor kinase-like Gene Family AT5G38260 35.849 5.62e-111 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu5g00439 Pkinase 1.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00439 - - pvu:PHAVU_011G198500g 1023.46