Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00431 ATGGAGCGTGTTTTTGAATGCAGGTTGGAAGAAACTGCTGAAGAACGAGCGTATGCCTGGGAACAAGTACACCGGAAACTCGAACCAAATACCGGAGAGAGAGAGCTGAGGAAGAGTGGGAGAGTGATTCAGTTGAAGGAGGTGAATGAGGTCAATGGGAGCAGTGGTGAGGCTTTCGAGAAGGAGAAGGCGCGTTTGAGGGAAGAAGTGAGCGACGCGGGTGATGGTGTTGAAGGGAGTAGGGTGAGGAAGGGGGTGGGGGAAGAGAGGCATGAAACGAAGCCGTTTAGACAGAGGCTGTTGGTGGTTGCTAATAGGTTGCCGGTGTCGGCGGTAAGGAAAGGCGAGGACGCGTGGTCGTTGGAGATAAGTGCCGGTGGTCTCGTCAGCGCGTTGTTAGGTGTGAAGGAGTTTGAGGCAAGGTGGATAGGTTGGGCTGGAGTGAACGTGCCAGATGAGATTGGTCAGAAGGCACTTACTAAAGCTTTGGCTGAAAAGAGGTGTATCCCTGTATTTCTTGATGAAGAGATTGTTCATCAGTATTATAATGGCTATTGCAACAATATATTGTGGCCCCTTTTCCACTACCTTGGACTTCCACAAGAAGACCGTCTTGCCACCACGCGCAGTTTTCAGTCTCAGTTTGAGGCATATGAGAAAGCAAATCAGATGTTTGCTGATGTTGTGAACAAGCACTATGAAGAGGGCGATGTTGTTTGGTGCCATGATTACCATCTTATGTTCCTTCCAAAATGCCTAAAGAAACATAACAAAAAAATGAAAGTTGGATGGTTTCTCCATACCCCTTTCCCATCTTCTGAAATTCACAGGACACTGCCATCTCGTTCAGAGCTCTTGCATTCCGTTCTCGCTGCTGATTTAGTTGGTTTTCACACCTACGATTATGCAAGACATTTTGTTAGTGCCTGTACTCGCATCCTTGGACTTGAAGGTACACCTTATGGGGTTGAGTATCAAGGGAAGCTAACTCGAGTTGCTGCATTTCCAATTGGGATAGACTCGGAACGATTTATACGAGCTCTTGACCTTCCCGCAGTACAAGATCACATCAAAGAACTACAAGAAAGATTTAAAGGCAGAAAGGTAATGTTAGGTGTTGATCGCCTTGATATGATTAAAGGAATCCCGCAGAAAATTCTAGCATTTGAAAAATTTTTGGAAGAAGATCCTTATTGGCGTGATAAAGTTGTTCTACTACAAATCGCTGTCCCGACAAGAACAGATGTTCCTGAGTGTATGCTACTCACATGA 1272 0.4591 MERVFECRLEETAEERAYAWEQVHRKLEPNTGERELRKSGRVIQLKEVNEVNGSSGEAFEKEKARLREEVSDAGDGVEGSRVRKGVGEERHETKPFRQRLLVVANRLPVSAVRKGEDAWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFEAYEKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKKHNKKMKVGWFLHTPFPSSEIHRTLPSRSELLHSVLAADLVGFHTYDYARHFVSACTRILGLEGTPYGVEYQGKLTRVAAFPIGIDSERFIRALDLPAVQDHIKELQERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEEDPYWRDKVVLLQIAVPTRTDVPECMLLT 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00431 423 Gene3D Glycogen Phosphorylase B; 346 423 - -
Vimu5g00431 423 Pfam Glycosyltransferase family 20 99 418 IPR001830 GO:0003824|GO:0005992
Vimu5g00431 423 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 98 418 - -
Vimu5g00431 423 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 91 345 - -
Vimu5g00431 423 CDD GT20_TPS 99 418 IPR001830 GO:0003824|GO:0005992
Vimu5g00431 423 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 88 418 IPR001830 GO:0003824|GO:0005992
Vimu5g00431 423 Gene3D Glycogen Phosphorylase B; 90 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00431 Vimu-Chr5 4160465 4165320 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00431 33 423 Trehalose Biosynthesis Gene Families AT1G78580 79.648 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00431 K16055 - gmx:100797320 697.967