Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00430 ATGGCATTCCCTGTAGTTTTGTTGCTTTTAGCCACTACAGAACCCATCCCTGTAAACCCATCAGTGAGTGATGGCATTCCATGTAGTTTTGTTGCTTTTAGCCACTACAGAACCCATCATTTTGTCGCTTTTAGCCACTACAGGCCCCGTCAGTCAGTGATGGCAATCCCTGTAGTTTTGATGCAAGCCTCATCCTTACTTGATGGTGCTATTTTGTCAAAGTCACCCCACTTGAAGTTTCATGCACAGTCTCTTGGGGCTGGGGCAATTCTTGTCAACCCCTGGAACATTACAGAAGTTGCGGCTGCAATTGCCAGGGCTCTGAAGATGCCATCTGCAGAAAGAGAAAAGAGACATAAGCATAATTTTCTTCATGTAAAATCCCACACTGCTCAAGAATGGGCAGGAACCTTCGAGAGGTCCATATATGATGAATCTTTGAATATTTGCAGTGAACTAAATGACACTGTTATTGAGGCACAACTAAGGACAAGACAAGTTCCACCTCAACTTCCAACCAAGACTGCAATTGAAACCATAGGTGGTGAATGGCCAATTCTTAATGGCACTACTTGTGTTGAATTGCAATTAGAAACGTGGGTGGATGAGATCCAGAGGCAAAAAGTACAAAGCAAGTCCAAGGGGGTGACTCAGAAATTTTATGGGAGAACAAATGATCTGAAGGTGAATAGGAAGAAATGCACATCTGGGCAGCCAAAACTAGAACTGGGGGACTCTTTGGGTACTGTTGCTCATGGTGGTATATCTAGGGACAGGAGCGCCATTTATGATGCCATGTATGCATATGGGTGCTATTTTGATAATTTAGATTGCTTTCACAATAGGATGCTTAGTGTTCCGGGATTCAGTGGAACTTTAACTGAACCAGTCGAAAAAACAGGTGATCAGATTAAGGAAATGGAACTTAAGGTGCATCCAAAACTGAGACAACCCTTGACAGCACTATGCAGTGATCCAAATACCACAGTTGTTGTGCTCAGTGGAAGTGGTAGACAAGTCCTGGATGATAACTTCAAAGACTATGACATGTGGTTGGCGGCTGAGAATGGAATGTTTTTACATCCTTCAAAGGGTGAGTGGATGACGACAATGCCAGAGCATCTGAATATGGAATGGCTTGATAGTGTGAAGCATGTTTTTGAGTACTTCACAGAAAGAACACCTCGGTCACATTTTGATTTTGAAGAAAGAGAAACTTCACTTGTATGGAATTACAAATATGCAGATGTTGAGTTTGGAAAGCTTCAAGCAAGGGACATGCTGCAGCATCTCTGGACAGGTCCAATTTCTAATGCATCAGTTGAAGTTGTTCAAGGGAGCCGATCTGTTGAGGTGCGAGCTGTTGGTGTTACGAAGGGAGCAGCCATTGACCGCATCTTGGGTGAGATAGTGCACAGTAAATCAATGACATCACCAATTGATTATGTTCTTTGCATAGGACATTTTCTGGGGAAGGACGAAGATATTTATTCATTTTTTGAGCCAGATCTTCCTTCTATTGGTGTGGGTCTTCCACGAAGCAAGGTAACATCAGATGGAGTTAAGTTTCCTGTTGAGAGGAAAGCATGTTTGAAGGAACCACCAATTACTAAGAGCGGACCAAAGTCATCTCAAAATAAGGCAACACGAGCAGTGTCAAATTCTGAGAAGAAATCAAACAATCATATCTCCATTACACCACGAAGGGCAGCACCTGAAAAGGTTTCATGGAACGTCCTCGACCTTAAAAAAGAGAATTACTTCTCTTGTGCCATTGGACGAACTCGAACAAATGCTCGGTATACGCTTGATTCATCCGACGATGTTGTTTCATTTCTGAAGGAACTAGCTAATGCTTCTATCCGAACGTAG 1872 0.4279 MAFPVVLLLLATTEPIPVNPSVSDGIPCSFVAFSHYRTHHFVAFSHYRPRQSVMAIPVVLMQASSLLDGAILSKSPHLKFHAQSLGAGAILVNPWNITEVAAAIARALKMPSAEREKRHKHNFLHVKSHTAQEWAGTFERSIYDESLNICSELNDTVIEAQLRTRQVPPQLPTKTAIETIGGEWPILNGTTCVELQLETWVDEIQRQKVQSKSKGVTQKFYGRTNDLKVNRKKCTSGQPKLELGDSLGTVAHGGISRDRSAIYDAMYAYGCYFDNLDCFHNRMLSVPGFSGTLTEPVEKTGDQIKEMELKVHPKLRQPLTALCSDPNTTVVVLSGSGRQVLDDNFKDYDMWLAAENGMFLHPSKGEWMTTMPEHLNMEWLDSVKHVFEYFTERTPRSHFDFEERETSLVWNYKYADVEFGKLQARDMLQHLWTGPISNASVEVVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKSMTSPIDYVLCIGHFLGKDEDIYSFFEPDLPSIGVGLPRSKVTSDGVKFPVERKACLKEPPITKSGPKSSQNKATRAVSNSEKKSNNHISITPRRAAPEKVSWNVLDLKKENYFSCAIGRTRTNARYTLDSSDDVVSFLKELANASIRT 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00430 623 Pfam Trehalose-phosphatase 306 506 IPR003337 GO:0003824|GO:0005992
Vimu5g00430 623 Gene3D - 373 455 - -
Vimu5g00430 623 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 82 618 IPR001830 GO:0003824|GO:0005992
Vimu5g00430 623 SUPERFAMILY HAD-like 291 617 IPR036412 -
Vimu5g00430 623 MobiDBLite consensus disorder prediction 533 567 - -
Vimu5g00430 623 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 373 455 - -
Vimu5g00430 623 Gene3D Glycogen Phosphorylase B; 57 128 - -
Vimu5g00430 623 MobiDBLite consensus disorder prediction 538 566 - -
Vimu5g00430 623 Gene3D - 306 510 IPR023214 -
Vimu5g00430 623 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 81 143 - -
Vimu5g00430 623 CDD HAD_TPP 288 517 - -
Vimu5g00430 623 Pfam Glycosyltransferase family 20 82 143 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00430 Vimu-Chr5 4147505 4154777 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00430 280 620 Trehalose Biosynthesis Gene Families AT1G78580 65.634 8.15e-155 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00430 K16055 - vum:124848969 669.463