Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00429 ATGTCCCTCTCACCCATTTCCAATTCTCAATCTTTCCCAATGTCTCAATCTAACAACCCCAAAATGCATTCCTCCGCCACTTCCCTCCGCCACCTTCCGCCGCTCAAGAGATTCCGACTCATTCAACAACAACAACAAACACACCAAAATCACTTTTCCGACTCTTCACCTTTACCCACCAAAAAACGCAGAGAATCGAGAACCCCTTCTCCTCCTTCCATCCTTCACAACTTCTCCCTCCCCGCCAAAAAACGAGTCTGGGCCCCACACCCCCAAACTCCTCCTTCCTCAAACGACATCGTTTCCCTTCCCCAACCCTCCCCTGACGACGCCGCCGCCGCTCCCCCATTTGATCTCAACATCGAATACAACCCCAACCTCGGAGAATCCCAAAACAACGCCGCCGACGATGACGACGGGGTTTTGTGCTGTGTGTGCCAGAGCACGGACGGAGATCCTGCGGACCCAATCGTCTTCTGCGACGGCTGCGACCTCACGGTGCACGCCTCCTGCTACGGCCACCCTTTGTCGAAGGGAGTCCCCGACGGCGACTGGTTCTGCGAACGGTGTCGTGTCGGGGAAGGCAAGAGCGGCACCCGCTGCGCGCTGTGTCCCGCGAGTGAGGGCGCGATGAAGCGCACCGCGGACGGCGCGTGGGCCCACGTGGTGTGCGCGCTGTTCGTGCCGGAGGTGTTTTTTCAGGACCCGGAAGGGAGGGAGGGGATCGACTGCTCCATGGTTCCGAGGAAGAGGTGGTCGCAAAGGTGCTACCTTTGCGAGTGTTGTGACGGTTGCGGTCTGGTGTGCTCGGAGCCAAAGTGTGGGTTGGCGTTTCATGTGACATGCGCCCTGAAGGAGGAGCTTTGGATTGAATACAAGGAAGGGAAGAAAGGGGGCACCATTGTTGCTGGCTTCTGCAAAACCCACACTCAGATATGGGAAAAGCAACAGCAATCTGGGAAGTACAAAATTGTCCCTCTTGAAGATGGAAAGTAG 996 0.5673 MSLSPISNSQSFPMSQSNNPKMHSSATSLRHLPPLKRFRLIQQQQQTHQNHFSDSSPLPTKKRRESRTPSPPSILHNFSLPAKKRVWAPHPQTPPSSNDIVSLPQPSPDDAAAAPPFDLNIEYNPNLGESQNNAADDDDGVLCCVCQSTDGDPADPIVFCDGCDLTVHASCYGHPLSKGVPDGDWFCERCRVGEGKSGTRCALCPASEGAMKRTADGAWAHVVCALFVPEVFFQDPEGREGIDCSMVPRKRWSQRCYLCECCDGCGLVCSEPKCGLAFHVTCALKEELWIEYKEGKKGGTIVAGFCKTHTQIWEKQQQSGKYKIVPLEDGK 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00429 331 Pfam PHD-zinc-finger like domain 200 308 - -
Vimu5g00429 331 ProSiteProfiles Extended PHD (ePHD) domain profile. 198 310 IPR034732 -
Vimu5g00429 331 SMART PHD_3 142 191 IPR001965 -
Vimu5g00429 331 SMART PHD_3 255 310 IPR001965 -
Vimu5g00429 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 196 IPR013083 -
Vimu5g00429 331 MobiDBLite consensus disorder prediction 39 56 - -
Vimu5g00429 331 CDD PHD_BRPF_JADE_like 142 190 - -
Vimu5g00429 331 MobiDBLite consensus disorder prediction 1 117 - -
Vimu5g00429 331 MobiDBLite consensus disorder prediction 1 26 - -
Vimu5g00429 331 SUPERFAMILY FYVE/PHD zinc finger 135 205 IPR011011 -
Vimu5g00429 331 ProSitePatterns Zinc finger PHD-type signature. 143 190 IPR019786 -
Vimu5g00429 331 Pfam PHD-finger 143 191 IPR019787 -
Vimu5g00429 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 312 IPR013083 -
Vimu5g00429 331 PANTHER PHD FINGER PROTEINS 132 310 - -
Vimu5g00429 331 ProSiteProfiles Zinc finger PHD-type profile. 140 193 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00429 Vimu-Chr5 4141020 4142384 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00429 43 331 C2H2 Transcription Factor Family AT3G14740 47.130 4.19e-99 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu5g00429 zf-HC5HC2H_2 3.3e-26 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00429 K11380 - gmx:100802652 456.832