Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00425 ATGACTTGCTTCCCATTCTCATTTGGTAGGAAAGTGCCCTCTGTGGCAAGACACAATCCAGATATTGATGAAGGCATTCAAAATGTAAGAATCTTTACCTACAAAGAACTAAGAGTTGCATCTGACAATTTCAGTCAGGCCAATAAAATTGGGCAGGGTGGCTTTGGTTCTGTTTATAAGGGATTACTAAAAGATGGAAAACTAGCTGCTATAAAAGTTCTTTCAGCAGAATCAACTCAAGGGGTGAAAGAATTTATGACAGAGATTAATGTGATCTCAGAAATAGAGCATGAAAATTTGGTTAAGCTATATGGATGTTGTGTGGAAGGGAACAACCGAATACTAGTCTACAATTATCTTGAGAACAATAGCCTTTCACAAACCCTTTTAGGTTCAGGTCACAGTAGTAACATCTTTTTTGATTGGAAAACACGATCTAGGATTTGCATTGGGATTGCACGTGGGCTCTCCTATCTGCATGAAGAAGTAAGACCACATATTGTTCATAGGGATATAAAAGCAAGCAATATCCTCCTTGACAAAAACCTTACACCTAAGATTTCAGATTTTGGTCTTGCAAAGCTTATTCCATCATACATGACTCATGTCAGCACGCGTGTGGCCGGAACAATAGGTTATTTGGCACCAGAGTATGCATTAAGGGGGCACCTCACACGTAAAGCAGATATTTACAGCTTTGGTGTACTCCTTGTGGAGATAGTGAGTGGAAGATGTCACACTAATACACTGTTACCGATAGGAGAGCAGTTTATTTTAGAAACGACATGGGAGCTTTATCAGCGAAGGGAATTGGTAGCGCTTGTAGATGCATCCCTAGACGGGCATTTTGACGCCGAGGAGGCCTGTACATTTCTGAAAGACACGTCGAAACTCCGGCCACCAATGTCTTCTGTGGTGAAGATGCTCACTGGAGAAATGGACATAGATGAAAGCAAGATAACAAAGCCAGGCCTGATTTCAGATTTTATGGATCTTAAAATCAGAGGAGATAAAAAAGATGGTGATATTGAAACCAAGGGTTCATCTTCCTACAATGCATCTTCTGCTTCAGATAGCCAGGGTAACACCATGTCATTTGCTGCAAGTACAAGTACAACCACAACCTTCACTCTTGCTATGGCTCTCTCTATCAGACCGTCTCCGAGAGTGCAGCCTGAACGAAGAGATTACATCAGCTACTTCGATTCTCTCCTCTGCTCACGTGACAAATACGACTCCAGTGACGAGGTGATACCGGACTACGAGGTAATCGATGTGGTGGCGGATGGTGGCTACGGGCGAGTCTACCGGTGCCTCGAGCCTGTCACCTACAATGTCGTCGCCTTGAAACAGATCATAATAATCGGCTCGTTCCAGGGTGTACCGGCTCAGATCATCCGCGAAGTGGCGTTCCTCAAAGAACTCCGCCATAATAACATTGTGAAGTTGCTTAAAGTCTATGTCAGGGGAGACAGATATGTCAATCTTGTCTTCGAGCATCTCCAGTGCGACCTTCATGACTATATTAGGAAAAGCCGTTATCGCAGTTACAAGATTATAAAGATACTCCTTGCTCTGGATTTCTGCCATACGCGTAAGGTTCTACATAGAGATTTGAAACCCAGCAATGTGCTGGTTGATGAACCTAATTTGCTGATCAAACTTGCGGATTTTGGTTTGGCTAGAGAGTTTAGAGATGACATATTATATACTGAGCAGTTAGGAACTGCCTGGTACAGGGCACCTGAAATGTTGTTCGACAACTATCGATATTCATCTCCAATTGATTTGTGGGGTGCTGGCTGTGTATTTGCTGAGATGCTAATTGGAGGACCTCTATTCCATACTAGTAGGAACCGGAATGAGTTGGAGGCAATTTTCAGACTGTTAGGTACTCCCACAGAGGATACATGGCCAGGAATCACTCAAGTATTGCCTAACATTCATAAGTACCCGAAATATCAGCCAGTGGGCATGCACAATCTGTTTCCTAAACTGGAACAAAGTGGCCAGAATCTTCTAGCAAGAATGCTTTCCATGAACCCAAATGACAGGATTTCTGCGTCAGCCGCTCTAAACCATGCTTACTTTAGGGATGCTCGGCCGCCAAGGGAGCAGTCGTCGGGTTGCATTCCTTTTCGATGA 2145 0.4354 MTCFPFSFGRKVPSVARHNPDIDEGIQNVRIFTYKELRVASDNFSQANKIGQGGFGSVYKGLLKDGKLAAIKVLSAESTQGVKEFMTEINVISEIEHENLVKLYGCCVEGNNRILVYNYLENNSLSQTLLGSGHSSNIFFDWKTRSRICIGIARGLSYLHEEVRPHIVHRDIKASNILLDKNLTPKISDFGLAKLIPSYMTHVSTRVAGTIGYLAPEYALRGHLTRKADIYSFGVLLVEIVSGRCHTNTLLPIGEQFILETTWELYQRRELVALVDASLDGHFDAEEACTFLKDTSKLRPPMSSVVKMLTGEMDIDESKITKPGLISDFMDLKIRGDKKDGDIETKGSSSYNASSASDSQGNTMSFAASTSTTTTFTLAMALSIRPSPRVQPERRDYISYFDSLLCSRDKYDSSDEVIPDYEVIDVVADGGYGRVYRCLEPVTYNVVALKQIIIIGSFQGVPAQIIREVAFLKELRHNNIVKLLKVYVRGDRYVNLVFEHLQCDLHDYIRKSRYRSYKIIKILLALDFCHTRKVLHRDLKPSNVLVDEPNLLIKLADFGLAREFRDDILYTEQLGTAWYRAPEMLFDNYRYSSPIDLWGAGCVFAEMLIGGPLFHTSRNRNELEAIFRLLGTPTEDTWPGITQVLPNIHKYPKYQPVGMHNLFPKLEQSGQNLLARMLSMNPNDRISASAALNHAYFRDARPPREQSSGCIPFR 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00425 714 MobiDBLite consensus disorder prediction 340 362 - -
Vimu5g00425 714 Pfam Protein kinase domain 45 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00425 714 Pfam Protein kinase domain 421 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00425 714 ProSiteProfiles Protein kinase domain profile. 44 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00425 714 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Vimu5g00425 714 Gene3D Phosphorylase Kinase; domain 1 412 513 - -
Vimu5g00425 714 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
Vimu5g00425 714 FunFam Putative LRR receptor-like serine/threonine-protein kinase 120 321 - -
Vimu5g00425 714 Gene3D Transferase(Phosphotransferase) domain 1 120 322 - -
Vimu5g00425 714 FunFam cold-responsive protein kinase 1 16 119 - -
Vimu5g00425 714 ProSiteProfiles Protein kinase domain profile. 421 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00425 714 SUPERFAMILY Protein kinase-like (PK-like) 25 309 IPR011009 -
Vimu5g00425 714 ProSitePatterns Serine/Threonine protein kinases active-site signature. 534 546 IPR008271 GO:0004672|GO:0006468
Vimu5g00425 714 Gene3D Phosphorylase Kinase; domain 1 15 119 - -
Vimu5g00425 714 MobiDBLite consensus disorder prediction 346 362 - -
Vimu5g00425 714 SUPERFAMILY Protein kinase-like (PK-like) 416 702 IPR011009 -
Vimu5g00425 714 SMART serkin_6 421 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00425 714 SMART serkin_6 44 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00425 714 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 428 587 - -
Vimu5g00425 714 Gene3D Transferase(Phosphotransferase) domain 1 514 709 - -
Vimu5g00425 714 FunFam CMGC family protein kinase 499 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00425 Vimu-Chr5 4083695 4093103 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00425 420 610 Receptor kinase-like Gene Family AT1G07650 31.731 5.26e-14 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu5g00425 Pkinase 9.7e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00425 - - gmx:100800503 635.565