Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00424 ATGTGGATCAAGAAGGTGGAGCTATCAGATGTTGCGGGAGTAGACCTTGTGGGTGGATTATTTGTAGTGGGTATTGAAATAAGACCAGTTCCTAGGTACAATTGTTTTGAAGACTACTCATTTCATCAATCATTGCTTGTCTCCACTTGGGATGGGATAATGTATCACCTAAAGTGTTGGGAAATGGTCAAATACCTTTTAATGCAGCAATGGACCACTGAAGGTCGAGGGTTCGTGGTTGATGCTGATGTGTCTAAAGAAGTTGCTCTGTTTGTGGTCCTACTTGTGGAACATCTTGGTGTATCAAAGAGTCAGCTTGAGGCAGATGGAAGTGGAATGTGTAGTAGAGGACTCAAAGAATACGCACCTGATTCTAAGAGCTTAGTTGTGGACAAAGCCTATCAACGTCTGGGTGAGGATGATGTTCCCAAGTTCACCGTGATAGTGGCACAGAAAAATCATCATACTAGGCTGTTTCAGACTAATAGTCCGGAAAATGTTCCTCCAGCAATCACGCATCCAAGAAATTATGATTTTTACATGTGTGCTCATGCGGGGATGATGGGAACATCTAGGCCTGTACATTATCATGTGCTACTTGATGAGATTGGTTTCTCAGCAGATGGCTTACAAAATTTGATCCATTCGCTGTCCTATGTGTATGCATTCTACCTTTTGTTTATATGTTAA 690 0.4188 MWIKKVELSDVAGVDLVGGLFVVGIEIRPVPRYNCFEDYSFHQSLLVSTWDGIMYHLKCWEMVKYLLMQQWTTEGRGFVVDADVSKEVALFVVLLVEHLGVSKSQLEADGSGMCSRGLKEYAPDSKSLVVDKAYQRLGEDDVPKFTVIVAQKNHHTRLFQTNSPENVPPAITHPRNYDFYMCAHAGMMGTSRPVHYHVLLDEIGFSADGLQNLIHSLSYVYAFYLLFIC 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00424 229 Gene3D - 98 225 IPR036397 GO:0003676
Vimu5g00424 229 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 131 222 - -
Vimu5g00424 229 Pfam Piwi domain 132 223 IPR003165 GO:0003676
Vimu5g00424 229 SUPERFAMILY Ribonuclease H-like 132 223 IPR012337 -
Vimu5g00424 229 SMART Piwi_a_2 20 228 IPR003165 GO:0003676
Vimu5g00424 229 ProSiteProfiles Piwi domain profile. 143 221 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00424 Vimu-Chr5 4080207 4082921 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00424 129 222 Eukaryotic Initiation Factors Gene Family AT5G43810 46.296 6.95e-24 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00424 K11593 - tcc:18612364 164.081