Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00423 ATGACAGAGGTAGTTCCTGGAACTGAAGAGGCTGCTGAACCTCCAGCATCACCTCAACCATCTCCTGATGTGCCACATAATATGGAAACTGAACAGTTAACTCCTACAAAGTATTCTATTATGAGTAGGAATGGGGTTGGGACCTTAGGAAAACAGATATCTTTACTTGTGAATCTCTTTGAAGTTTCTGTTAATGCTCCAGACACACTGTTTTTCCAGTATAGTGTTGCTATTACTTTAGAAGATAAGCGAGCAGTTGAAAGCAAGGTCATTGGGAGAAAAGTGATTAACAGGCTTTATCAAATATACTCTTCTGAACTTGGTGGCAAAAGGTTTGCCTATGATGGAGGAAAAACTTTGTACACAGCAGGTCCTCTGCCGCTAAATAAGTATGAGTTCAAAGTTCCTTTGGAGGAATCATTTAGAAAACGTGCTGGTGCTGATGGAAGCCTTTGTGAGGAAAGTAAAAGGTCCAAACATTCTTTTCAGCTAAAGACATTCATGGTGGAGATAAGTTTTGCAGCCAAAATACCCATGCAGTCCATTGCTGTTGCTCTCAAAGGGGTTGACTCAGATGTCAATTCTGAAGATGCGTTGAGGGTGCTTAATACTGTACTGAGGCAGCGTGCAGCTGATTGGCAGTCCTTTTTTCACGATGACCCAAGAAATTTCACTGATGTTGGGGCTGGTGTAACAGCAGTCTCGGGTTTTCATTCCAGTTTTCGTTCCACACCGCGAGGGTTGTCTCTAAATATGGACGTGTCAACAACTGTGATCATAAAACCTGGTCCTGTAATTGATTTTCTGTTATCAAATCAGCAAGTGAGGGAACCCCGATATATTGACTGGGAAAAGGCCAAAAAGGTGCTTAAAAATTTAAGGGTACAAGCAACTCATCGAAACCTGGAATTTAAAATTTCTGGCTTGAGTGAGAAACCATGCAATCAGCAAATTTTTAGCATGAAGGTTAAAAATGACAACGGCAGTAATGAAGGACAGACGGTGGAGATTACTGTATATGAATATTTTGTCAAACATTGTGGCATTGATCTGCCCTCATCTTATTATTTTCCATGTCTTGATGTTGGAAAACCAAATCGGCCCAACTATCTTCCTTTGGAGCTATGTTCACTTGTGTCCCTCCAACGGTATACAAAGGCACTCTTACCAATGCAAAGAGCATCTTTAGTTGAGAAATCACGCCAAAAGCCTCAAGATAGAATCAAAATTCTGAAAAATGCTGTAGGAAACTATTGCTATGATGATGATCCTGTTCTTGCTGCATGTGGCATTTCTGTTGATAAACAATTGGCTCTTGTTGAAGGTCGTGTTCTTGAGGCACCACAGACACTTCTACAACCATCGCATATTGATTATTGGGCTGTTGTCAACTTTTCTGCAAGATGTGATACTAGTTACTTATCAAGGGAGCTGATCAGATGTGGAATGAGCAAGGGCATTAACATTGAACGGCCACATTCTTTGGTAGAGGAGGAACCACAGTTGAGAAGATCTAACCCTGTTTCAAGGGTTGAAAGAATGTTTGACCTGCTGAAATCAAAACTAAATAGAGAACCAAAGTTGATTCTTTGTGTCTTACCAGAGAGGAAAAATTGTGATATATATGGGCCTTGGAAAAAGAAGTGTCTGAGTGAAGTCGGTGTTTTCACACAGTGCATTTCCCCTGTCAAGATCACTGATCAATACCTTAATAACATACTTCTCAAAATCAATTCTAAGCTTGGAGGAATAAATTCTCTGTTGGCAATGGAGCATTCTGGCCATCTTCCCTTAATTAAAGACACCCCAACAATGATTTTGGGGATGGATGTCTCTCACAGAGCGTCTGTGAGATTGCAGGCATCTAAGGTAGAGATGATTGATGCTCTGTACAAGCCATTGGAAAATGGGGGTGACGATGGTATTATCAGGTTAGAGTAA 1941 0.408 MTEVVPGTEEAAEPPASPQPSPDVPHNMETEQLTPTKYSIMSRNGVGTLGKQISLLVNLFEVSVNAPDTLFFQYSVAITLEDKRAVESKVIGRKVINRLYQIYSSELGGKRFAYDGGKTLYTAGPLPLNKYEFKVPLEESFRKRAGADGSLCEESKRSKHSFQLKTFMVEISFAAKIPMQSIAVALKGVDSDVNSEDALRVLNTVLRQRAADWQSFFHDDPRNFTDVGAGVTAVSGFHSSFRSTPRGLSLNMDVSTTVIIKPGPVIDFLLSNQQVREPRYIDWEKAKKVLKNLRVQATHRNLEFKISGLSEKPCNQQIFSMKVKNDNGSNEGQTVEITVYEYFVKHCGIDLPSSYYFPCLDVGKPNRPNYLPLELCSLVSLQRYTKALLPMQRASLVEKSRQKPQDRIKILKNAVGNYCYDDDPVLAACGISVDKQLALVEGRVLEAPQTLLQPSHIDYWAVVNFSARCDTSYLSRELIRCGMSKGINIERPHSLVEEEPQLRRSNPVSRVERMFDLLKSKLNREPKLILCVLPERKNCDIYGPWKKKCLSEVGVFTQCISPVKITDQYLNNILLKINSKLGGINSLLAMEHSGHLPLIKDTPTMILGMDVSHRASVRLQASKVEMIDALYKPLENGGDDGIIRLE 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00423 646 CDD PAZ_argonaute_like 262 379 - -
Vimu5g00423 646 MobiDBLite consensus disorder prediction 1 29 - -
Vimu5g00423 646 Pfam PAZ domain 266 392 IPR003100 GO:0005515
Vimu5g00423 646 ProSiteProfiles PAZ domain profile. 287 380 IPR003100 GO:0005515
Vimu5g00423 646 SUPERFAMILY PAZ domain 257 420 IPR036085 GO:0005515
Vimu5g00423 646 Pfam N-terminal domain of argonaute 51 206 IPR032474 -
Vimu5g00423 646 SUPERFAMILY Ribonuclease H-like 512 618 IPR012337 -
Vimu5g00423 646 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 32 616 - -
Vimu5g00423 646 Gene3D paz domain 256 384 - -
Vimu5g00423 646 SMART PAZ_2_a_3 263 402 IPR003100 GO:0005515
Vimu5g00423 646 Pfam Piwi domain 528 618 IPR003165 GO:0003676
Vimu5g00423 646 Gene3D - 448 595 - -
Vimu5g00423 646 Pfam Argonaute linker 1 domain 214 261 IPR014811 -
Vimu5g00423 646 ProSiteProfiles Piwi domain profile. 528 613 IPR003165 GO:0003676
Vimu5g00423 646 SMART DUF1785_2 210 262 IPR014811 -
Vimu5g00423 646 Pfam Argonaute linker 2 domain 409 449 IPR032472 -
Vimu5g00423 646 FunFam Protein argonaute 7 257 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00423 Vimu-Chr5 4070396 4075170 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00423 43 613 Eukaryotic Initiation Factors Gene Family AT5G43810 31.179 1.33e-72 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00423 K11593 - gmx:100778875 1023.85