Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00422 ATGATGGTTCAGATACCAGTGGCTTGCCATTTGGGCTCAACTGTCTCCAGAAAAATTTTCCTTGCAATCGAGGTGTTGGAAGATGTAAATTCTGACTTTGCTATCAAGTGTGGCGGACCCCAAATTACGTCCACAGAAGGAATCACATATGAAAGGGAGAATGAGACACTTGGTTCTGCTACATACTTTGTTACTGATACAAGTAGATGGGCTGTTAGTAATGTTGGATTGTTTACGGGCAATAATAATCCAGAATACACAAAATTTGTGTCTAATCAATTCACTAACACTATGAATACGGAGCTCTTCCAAACAGCACGGGTCTCTCCTTCGTCGTTAAGATATTATGGCTTGGGGCTGGAAAATGGCTTTTACAACATCACCCTTCAATTTGCAGAAACAGCTATTCTAGATTCTGCTGGAAGATGGGAAAGTCTTGGGAGACGAGTCTTTGATATATATATCCAGGGGAATCTTGTTTTGAAAGATTTCGACATAAAAAAGGAAGCTGGGGGCATCTCATTCAGAGCTGTCCAAAGGCAATTTAGGTTTGAAGTGACGGAAAACTATATTGACATCCATCTCTTTTGGGCTGGAAAGGGGACTTGTTGCATACCAGCTCAAGGTACTTACGGGCCCTTGATTCAAGCCATCCATGCTATCCCAGATTTTATACCTACTGTCAGTAACGAACCTCCAAGCAATTCAAATAATAGAACCGGCCTTATTGTTGGAATTGTTGTTGGAGTTGGAGTTGTAGCCTTCCTATCAGTTTTTGTGATTTTCTGTATCATTCGGAGAAGAAAACGTCAGCATGAGGATGAAGAGCTTTTAGGAATTGATACAAAGCCATACACTTTCAGTTATTCTGAGTTGAAGAATGCTACTAATGACTTTAATGTCGAAAATAAGCTTGGAGAGGGAGGTTTTGGACCTGTTTATAAGGGGACACTTAATGATGGAAGAGTTATTGCTGTGAAACAACTGTCAGTAGCATCTCATCAAGGAAAGAGCCAGTTCATAACTGAGATTGCTACTATATCAGCTGTACAACATCGTAATCTGGTTAAACTATATGGATGTTGCATTGAGGGAAATAAGAAACTTCTTGTGTACGAGTATCTGGAGAATAAGAGTCTTGATCAAGGATTATTTGGAAATTCTTTAACCCTCAATTGGTCCACACGCTATGATATTTGCACGGGTATTGCCAGAGGTTTAGCATATTTACATGAAGAGTCTCGTCTCCGTATTGTACACCGTGATGTGAAGGCTAGTAATATTTTGCTTGACTACGAGCTTGTACCCAAAATATCTGATTTTGGATTGGCCAAATTGTACGATGATAAAAAGACCCACATAAGCACCCGTGTGGCTGGAACAATTGGATATCTTGCACCGGAGTATGCCATGCGTGGACACCTTACAGAGAAAGCAGACATATTTTCATTTGGGGTTGTTGCTCTTGAGTTAGTAAGTGGGAGACCAAATTCTGATTCACGTTTGGAAGGAGACAAGGTCTATCTTCTTGAATGGGCTTGGCAGCTTCATGAAAGCAACCTCATAATGGATCTGGTGGACCCTAGACTTTCAGAATTCAATGAGGAAGAAGTAAAACGTATTGTGGGAATAGCACTTCTGTGCACTCAGACATCACCATCATTAAGGCCATCAATGTCACGAGTGGTGGCAATGCTTTCAGGAGATATTGAAGTGAACAATGTTACTTCAAAGCCTGGATATCTTACTGACTGGAAATTTGATGATGTTAGCAGCTTCATGACTGAAAATGCTATCAAAGGATTCAATACAAGTTACCAGTCTTCATCGGGAAGTACCAGCATGGTGGGTGGTGCAGACTATTCACCCATAAGTGTTTCTAAACCGATCCTTGAGGATGCTCTTAATGAGGGTAGGTAA 1920 0.4083 MMVQIPVACHLGSTVSRKIFLAIEVLEDVNSDFAIKCGGPQITSTEGITYERENETLGSATYFVTDTSRWAVSNVGLFTGNNNPEYTKFVSNQFTNTMNTELFQTARVSPSSLRYYGLGLENGFYNITLQFAETAILDSAGRWESLGRRVFDIYIQGNLVLKDFDIKKEAGGISFRAVQRQFRFEVTENYIDIHLFWAGKGTCCIPAQGTYGPLIQAIHAIPDFIPTVSNEPPSNSNNRTGLIVGIVVGVGVVAFLSVFVIFCIIRRRKRQHEDEELLGIDTKPYTFSYSELKNATNDFNVENKLGEGGFGPVYKGTLNDGRVIAVKQLSVASHQGKSQFITEIATISAVQHRNLVKLYGCCIEGNKKLLVYEYLENKSLDQGLFGNSLTLNWSTRYDICTGIARGLAYLHEESRLRIVHRDVKASNILLDYELVPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADIFSFGVVALELVSGRPNSDSRLEGDKVYLLEWAWQLHESNLIMDLVDPRLSEFNEEEVKRIVGIALLCTQTSPSLRPSMSRVVAMLSGDIEVNNVTSKPGYLTDWKFDDVSSFMTENAIKGFNTSYQSSSGSTSMVGGADYSPISVSKPILEDALNEGR 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00422 639 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 54 607 - -
Vimu5g00422 639 ProSiteProfiles Protein kinase domain profile. 299 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00422 639 FunFam Leucine-rich repeat receptor-like protein kinase 30 222 - -
Vimu5g00422 639 Pfam Malectin domain 32 218 IPR021720 -
Vimu5g00422 639 CDD STKc_IRAK 305 566 - -
Vimu5g00422 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Vimu5g00422 639 SMART serkin_6 299 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00422 639 Gene3D Transferase(Phosphotransferase) domain 1 375 579 - -
Vimu5g00422 639 Pfam Protein tyrosine and serine/threonine kinase 301 566 IPR001245 GO:0004672|GO:0006468
Vimu5g00422 639 FunFam Leucine-rich repeat receptor-like protein kinase 268 374 - -
Vimu5g00422 639 Gene3D Phosphorylase Kinase; domain 1 261 374 - -
Vimu5g00422 639 SUPERFAMILY Protein kinase-like (PK-like) 282 585 IPR011009 -
Vimu5g00422 639 Gene3D - 32 222 - -
Vimu5g00422 639 FunFam Putative LRR receptor-like serine/threonine-protein kinase 375 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00422 Vimu-Chr5 4059568 4066366 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00422 27 639 Receptor kinase-like Gene Family AT1G56120 63.312 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu5g00422 PK_Tyr_Ser-Thr 9.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00422 - - gmx:100798233 1034.63