Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00421 ATGCTTTCTTCAAGAGAATATCATTTTTCAATTTTGTTCTTGTATGGGACACTTAATGATGGAAGAGTTATTGCTGTGAAACAACTGTCAGTAGCATCTCATCAAGGAAAGAGCCAGTTCATAACTGAGATTGCTACTATATCAGCTGTACAACATAGTAATCTGGTTAAACTATATGGATGTTGCATTGAGGGAAATAAGAAACTTCTTGTGTACGAATATCTAGAGAATAAGAGTCTTGATCAAGGATTATTTGGCTTGGCAGCTTCAAGAAAACAACCTCGTAATCGATCTGGTGGACCCTAG 306 0.366 MLSSREYHFSILFLYGTLNDGRVIAVKQLSVASHQGKSQFITEIATISAVQHSNLVKLYGCCIEGNKKLLVYEYLENKSLDQGLFGLAASRKQPRNRSGGP 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00421 101 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 16 85 - -
Vimu5g00421 101 Gene3D Phosphorylase Kinase; domain 1 4 74 - -
Vimu5g00421 101 Pfam Protein tyrosine and serine/threonine kinase 21 84 IPR001245 GO:0004672|GO:0006468
Vimu5g00421 101 SUPERFAMILY Protein kinase-like (PK-like) 14 88 IPR011009 -
Vimu5g00421 101 ProSiteProfiles Protein kinase domain profile. 1 101 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00421 Vimu-Chr5 4029314 4031230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00421 16 86 Receptor kinase-like Gene Family AT1G56120 70.423 1.46e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu5g00421 PK_Tyr_Ser-Thr 7.7e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00421 - - gmx:100798233 134.42