Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00420 ATGGACAGCACCGAAGACTCATCAATGAGTTCACAACAACAACAACAACCAAACCTCCCACCCGGTTTTCGGTTCCACCCTACAGACGAAGAGCTCGTGGTTCACTACCTCAAGAAGAAAGTTGATTCTGTTCCTCTCCCTGTTTCCATCATCGCTGATGTTGATCTCTACAAGTTTGATCCATGGGAATTACCAGCTAAGGCATCGTTTGGGGAGGAAGAGTGGTACTTTTTCAGTCCAAGAGATAGGAAGTACCCAAATGGCGCAAGGCCAAACAGGGCTGCAACTTCAGGGTACTGGAAGGCGACGGGGACAGATAAACCCATATGCAGTGGAACTCAAAAGGTTGGAGTGAAGAAATCTTTGGTTTTCTACGGAGGAAAGCCACCAAAAGGGGTGAAAACCGATTGGATCATGCATGAGTATCGTCTCGCTGAAACCAAGCCTAACAACAGACCACCTGGCTGTGACTTGAGCCACAAGAAAAACTCCCTAAGGCTGGATGATTGGGTGTTGTGCCGGATCTACAAGAAGGGCAACACACAAAGGTCAGGTATGGAGCAGGAGAGGGATGATTCCATGGATGAGATGATTGGAGAAGTACCTTCTTCCATGAACGTGGGCCAGATGAATGCGAGATTTCACCTTTCAAAGATGTGTACGAGCTACAGTAGTGCATTGTTGGAAAATGACAGAAACACGTTAGAAGGGGTGGTTATAGGCAATGGTGTGAATGGGATGAGCACTACTACTACTACTACTACTACAAGTGCCATGCCATCTCAGTTTGGCACTTCAAACTCCAAGCCAGATCATCTTCCTTTTGCCCTTTCAAACAACACTTCAGCCTCCAAAAGAACACTCTCAACACTCTATAACTGGAACGATGACAGTGATGAAAAACACTTCAATGGGAATGTCAGTGTTGTGAGGACTGATCAAGAGAACAATGCTTCTCCTGGTTCCTTTGCTACTCTGCTTAACCAGCTCCCACAAACACCTTCATTGCCTCAAATAGGCTCTATGGGAGATGGTTTACTTAGGACACAATACCAAATACAAGGGACTAATTGGTATGGCTAA 1083 0.4589 MDSTEDSSMSSQQQQQPNLPPGFRFHPTDEELVVHYLKKKVDSVPLPVSIIADVDLYKFDPWELPAKASFGEEEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPICSGTQKVGVKKSLVFYGGKPPKGVKTDWIMHEYRLAETKPNNRPPGCDLSHKKNSLRLDDWVLCRIYKKGNTQRSGMEQERDDSMDEMIGEVPSSMNVGQMNARFHLSKMCTSYSSALLENDRNTLEGVVIGNGVNGMSTTTTTTTTSAMPSQFGTSNSKPDHLPFALSNNTSASKRTLSTLYNWNDDSDEKHFNGNVSVVRTDQENNASPGSFATLLNQLPQTPSLPQIGSMGDGLLRTQYQIQGTNWYG 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00420 360 MobiDBLite consensus disorder prediction 1 21 - -
Vimu5g00420 360 Pfam No apical meristem (NAM) protein 20 144 IPR003441 GO:0003677|GO:0006355
Vimu5g00420 360 Gene3D NAC domain 28 183 IPR036093 GO:0003677|GO:0006355
Vimu5g00420 360 ProSiteProfiles NAC domain profile. 19 178 IPR003441 GO:0003677|GO:0006355
Vimu5g00420 360 FunFam NAC transcription factor 56 28 183 - -
Vimu5g00420 360 PANTHER NAC TRANSCRIPTION FACTOR 56 19 226 - -
Vimu5g00420 360 SUPERFAMILY NAC domain 9 178 IPR036093 GO:0003677|GO:0006355
Vimu5g00420 360 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00420 Vimu-Chr5 4004792 4006333 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00420 23 359 NAC Transcription Factor Family AT3G15510 52.646 7.35e-113 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu5g00420 NAM 1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00420 - - gmx:100811670 578.941