Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00414 ATGAATCATGAAAAAGAGAACCTTCTGTCTAGGGGCAATTCTTCGGGATCCAAGATGGTGCTGAATGACGCAATGGGCAACCATGGATTCAAGGTTCGAGACCTTGGGAAAATTTTGCGTCTTGCTTGGGCTCAAGAACAAGGTTACTTGGAAGAGTTTTGTTGTGCCAATACGAAAAATTGTTGTGGTCAGAGTGAACGGTTAGATAAACCAAGAATTCCAGAGGCACAGTTGCCCTCAGTTTCTAGAGGCCTTGATTTAAATGTTGTTTCAGTTCGAGATTCTCGGCCTCCATCTTATCATCACTGTGCCCCACCGAAAACAAGAAAACCTCCTCCATGGCATCTGCAGAATTACCATCTTCATCACGCGAAACTTCTCGCGTCTCAACCTGAAACGCAGAAAACCAGAAACCAAACAAAACCCAGAAACGTGAAACCATCTCCTTCCTCGCATCCTCATTGTGAGAGCGAAACCCTAAACGCGACATTCTCCAATCTGCGAGCAGTGCCTCCGCATAGGGAAGATTTCAAATCCCAATTGAAATCATTTTTCATTTTTCTATGGCGGCTGACGGTAGTGGCCATGAGGGTAGCGGCACAAGGAAGAAGAAAGAATACTAGATTTAATTCTCCTGTGGGTTGTGGTAGTGGAGCTAAGGTTTCGTTGTGGGATTTGAGATTTGCATTATTGGGGCCCCTTCGGATCTGGGTTTTGAAAGAACGCGTCTTGGTGATTTCATCTGGCGGTTTATGGACTATTGAAGAAGCTACAACGGTGAAGATGGAACTCATGAGATGGGTTCCCTTGGTCTTGGTTGTTGTTTTTCTAGTTTTGGTTAATGGGTCGTTTTCCTTATACACTCCTCCTGATAGCTATCTAATTGCATGTGGTTCTTCTCAAAACATCACCTTTCAAGGACGCACTTTTGTTCCTGACTCACAGCATTCTTCACTTGTAATGAAAACTGGGAATTCTTTTGTTGCTAGCACCAATTCTAGTGCCCCTTTTCCCATTTACCAATCGGCTCGGGTTTTCACCGAGAAAGCTTCTTATAGGTTTGAGATTCAGCAAGAAGGTAGGCACTGGGTTAGGCTATACTTTTCCCCTATTCCAAACTCCAGCCACAACTTGACTTCAGCTTCTTTGACAGTGGTTACTGATGATTTTGTACTCTTGAGCAACTTCACCTTTAGGAAATACAATGGTTCTTATATGTTCAAGGAGTATGTAGTGAATGTAACCTCTGATACATTGGTTGTGACTTTCATTCCTTCCAATGGTTCGGTGGCCTTTGTGAATGGAATTGAAGTTGTGTCAATGCCAAATGAGCTGTTTGTTGATCAGGCACTCTCTGTTAACCCGCCAGCACCGTTCAATGGACTTTCTGACCTTGCCTTTGAAACTGTTTATCGGTTGAATATGGGGGGTCCTTTGATTACTTCTGAAAATGACACCCTGGGTAGGACTTGGCTGAATGATAGAAAATACCTTCATGTGAACAGTTCAGTGCTTAATGTATCGGTGAATCCTTCAAGCATTAAGTATCCTGTTGCTGTTACACCTGAGACTGCCCCAAATTGGGTCTATGCTACTGCTGAAGCAATGGGGGATGCTAATGTAAATGATCCAAATTTCAACATCACTTGGGTCTTCAATGTGGATCCAAATTTCTCCTATTTCATCCGAGCGCACTTCTGTGATATCATGAGCAAGTCACTCAACAATTTAGTCTTCAACATGTTCATAAATTCTGACATAGCTCTTCAAAGCCTTGATCTCTCAACCATGACTAATGACTTGGCTGTACCTTACTTCAAGGACTTTGTTGCCAATGCCTCTGCAGACTCAAACACTTTGACTGTGAGTGTTGGTCCAGATCCTGTGGCTGACTTTCCAAATGCCACTATGAGTGGGTTGGAGATAATGAAGATCAGCAACTCGTTAAAGAGCTTGGATGGGCTTTATTCAGTTCACAGTCTTCTTCCAGGTTCACATTCAAAGAAAAGCATGGTAGGAGTAATTGTTGGTTCTGCTGTTGGTGCTGTAGTAGCTTTAGCAATGGCTGGTTTGTGTTATTGCTGCTTGGTGGGACGCACATCAAAGTCATCCACTCAACAGGGCCATTCATGGCTGCCTCTGCCCCTTTATGGAAACTCTCTCACCATGACGAAAAATTCAACGCTTTCACAGAAGAGTGGAACCGCAAGCTGCATTTCTTTAGCTTCATCAAATCTCGGACGGTTCTTCAACTTCCAGGAAATCCTAGATGCTACCAACAAATTTGATGAGAAGCTACTTCTGGGTGTTGGTGGTTTTGGAAGGGTTTACAAAGGAACGCTTGAAGATGGGACCAATGTAGCTGTGAAAAGGGGTAACCCAAGATCTGAGCAAGGGCTTGCAGAATTCCGGACAGAAATTGAAATGTTATCCAAGCTTCGCCATCGCCATCTTGTGTCCCTCATTGGTTATTGTGATGAGAGGTCAGAAATGATTCTTGTGTACGAATACATGGCTAACGGACCCCTCAGGAGTCATCTGTATGGAACAGAGCTGCCACCTCTCTCATGGAAGCAGCGGCTGGAGATTTGCATTGGAGCAGCAAGAGGCCTTCATTATCTCCACACCGGAGCAGCTCAAAGCATAATTCACCGAGATGTGAAGACAACAAATATCCTCTTAGATGAGAACTTTGTTGCAAAAGTTGCTGATTTTGGCCTCTCCAAGACAGGTCCTTCTCTTGATCAGACCCATGTGAGCACTGCTGTGAAGGGTAGCTTTGGTTATCTTGATCCTGAATACTTCAGAAGGCAACAGCTTACTGAAAAATCAGATGTGTATTCATTTGGGGTAGTGTTGATGGAAGTGTTATGCACAAGGCCAGCCTTGAACCCTGTACTTCCAAGGGAGCAGGTAAACATAGCTGAATGGGCAATGACCTGGCAGAAAAAGGGTATGCTTGATCAAATCATGGATCAGAATCTTGTTGGAAAGGTGAATCCTGCATCCCTGAAGAAGTTCGGGGAGACAGCAGAGAAGTGCTTGGCCGAGCACGGCGTGGACCGGCCGTCCATGGGAGATGTTTTGTGGAATCTTGAGTATGCATTGCAGCTTCAAGAGACATCATCAGCACTCATGGAGCCAGAAGATAACAGCACAAACCACATCACTGGAATTCAGTTGACACCCCCAGATCATTTTGATAACAGTGTGAGTATGATTGATGGGGGCAACTCTTGCACTGATGATGATGCAGAAGATGCTGCTACAAGTGCAGTGTTCTCACAATTGGTAAATCCTCGTGGAAGATGA 3312 0.4438 MNHEKENLLSRGNSSGSKMVLNDAMGNHGFKVRDLGKILRLAWAQEQGYLEEFCCANTKNCCGQSERLDKPRIPEAQLPSVSRGLDLNVVSVRDSRPPSYHHCAPPKTRKPPPWHLQNYHLHHAKLLASQPETQKTRNQTKPRNVKPSPSSHPHCESETLNATFSNLRAVPPHREDFKSQLKSFFIFLWRLTVVAMRVAAQGRRKNTRFNSPVGCGSGAKVSLWDLRFALLGPLRIWVLKERVLVISSGGLWTIEEATTVKMELMRWVPLVLVVVFLVLVNGSFSLYTPPDSYLIACGSSQNITFQGRTFVPDSQHSSLVMKTGNSFVASTNSSAPFPIYQSARVFTEKASYRFEIQQEGRHWVRLYFSPIPNSSHNLTSASLTVVTDDFVLLSNFTFRKYNGSYMFKEYVVNVTSDTLVVTFIPSNGSVAFVNGIEVVSMPNELFVDQALSVNPPAPFNGLSDLAFETVYRLNMGGPLITSENDTLGRTWLNDRKYLHVNSSVLNVSVNPSSIKYPVAVTPETAPNWVYATAEAMGDANVNDPNFNITWVFNVDPNFSYFIRAHFCDIMSKSLNNLVFNMFINSDIALQSLDLSTMTNDLAVPYFKDFVANASADSNTLTVSVGPDPVADFPNATMSGLEIMKISNSLKSLDGLYSVHSLLPGSHSKKSMVGVIVGSAVGAVVALAMAGLCYCCLVGRTSKSSTQQGHSWLPLPLYGNSLTMTKNSTLSQKSGTASCISLASSNLGRFFNFQEILDATNKFDEKLLLGVGGFGRVYKGTLEDGTNVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGTELPPLSWKQRLEICIGAARGLHYLHTGAAQSIIHRDVKTTNILLDENFVAKVADFGLSKTGPSLDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMTWQKKGMLDQIMDQNLVGKVNPASLKKFGETAEKCLAEHGVDRPSMGDVLWNLEYALQLQETSSALMEPEDNSTNHITGIQLTPPDHFDNSVSMIDGGNSCTDDDAEDAATSAVFSQLVNPRGR 1103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00414 1103 ProSitePatterns Protein kinases ATP-binding region signature. 768 790 IPR017441 GO:0005524
Vimu5g00414 1103 Pfam Malectin-like domain 295 645 IPR024788 -
Vimu5g00414 1103 CDD STKc_IRAK 768 1033 - -
Vimu5g00414 1103 SMART serkin_6 762 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00414 1103 FunFam Receptor-like protein kinase FERONIA 838 1054 - -
Vimu5g00414 1103 FunFam Receptor-like protein kinase FERONIA 466 647 - -
Vimu5g00414 1103 PANTHER OS07G0166700 PROTEIN 748 1039 IPR045272 GO:0004714|GO:0006468
Vimu5g00414 1103 Gene3D Transferase(Phosphotransferase) domain 1 838 1058 - -
Vimu5g00414 1103 FunFam Putative receptor-like protein kinase 292 442 - -
Vimu5g00414 1103 FunFam receptor-like protein kinase FERONIA 724 837 - -
Vimu5g00414 1103 ProSiteProfiles Protein kinase domain profile. 762 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00414 1103 MobiDBLite consensus disorder prediction 129 157 - -
Vimu5g00414 1103 Pfam Protein tyrosine and serine/threonine kinase 767 1029 IPR001245 GO:0004672|GO:0006468
Vimu5g00414 1103 MobiDBLite consensus disorder prediction 128 157 - -
Vimu5g00414 1103 SUPERFAMILY Protein kinase-like (PK-like) 741 1033 IPR011009 -
Vimu5g00414 1103 Gene3D Phosphorylase Kinase; domain 1 722 837 - -
Vimu5g00414 1103 Gene3D - 292 442 - -
Vimu5g00414 1103 Gene3D - 465 646 - -
Vimu5g00414 1103 ProSitePatterns Serine/Threonine protein kinases active-site signature. 882 894 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00414 Vimu-Chr5 3916150 3920571 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00414 267 1103 Receptor kinase-like Gene Family AT3G46290 52.415 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu5g00414 Malectin_like 2.2e-37 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00414 - - gmx:100809700 1540.4