Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00402 ATGGCACCAGAATACACAATTAGTGGGTTGTTGTTTATCAAATCTGATGTATACAGCTTTGGAGTATTGCTACTAGAGATAGTTTGGAGATTGTGGAAAGAGGACACTCCTATGAAATTAGTAGATGCTTCTTTGGGTGACTCCTTTAACATATCTGAAGCATTACGCTGCATTCATGTTGGTCTACTATGTGTGCAGCTACATCCAGATAACAAGCCACATATGGCATATGTGATTTTTATGTTGAGTGGTGAAAATATTTTGCGAGAACCTAAGGAACCTGGTTTTCTTGTTGCAAGGATGAAAACTGCTCGCGAATGTTAA 324 0.3858 MAPEYTISGLLFIKSDVYSFGVLLLEIVWRLWKEDTPMKLVDASLGDSFNISEALRCIHVGLLCVQLHPDNKPHMAYVIFMLSGENILREPKEPGFLVARMKTAREC 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00402 107 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 99 - -
Vimu5g00402 107 Gene3D Transferase(Phosphotransferase) domain 1 1 93 - -
Vimu5g00402 107 SUPERFAMILY Protein kinase-like (PK-like) 1 91 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00402 Vimu-Chr5 3795753 3796216 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00402 1 98 Receptor kinase-like Gene Family AT4G23280 42.975 1.12e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Vimu5g00402 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00402 - - vra:106753117 186.422