Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00369 ATGGATATTCTTTCTTCATTGATCTTTGTTGCATGTGCACTTATTATCCCTTCTCTCAAAGTTTTCATAGCAGCTGATACTATTCGTTTGTCCCAGTCCATTAGTGATGGCATGACCTTGGTTTCCAAAGGTGAAACATTTGAACTTGGTTTCTTCAGTCCTGAGTACTCAAAGAATCGTTATCTTGGAATTTGGTACAAGAACATCACACAGACAGTTGTTTGGGTTGCAAATGGGGCCTTGAATGACTCGTCAGGCATCTTAACAGTGAACAGCACAGGAAACCTTGTTCTCAGACAGCATGACAAGGTTGTGTGGTACACAACAACACCAGAAAAACAAGCACGGAATCCAGTGGCACAGCTTTTGGATTCAGGGAACCTTGTGGTAAGAGATGAGAGTGAAACAAACTCAGAATCCTATCTGTGGCAAAGCTTTGACTACCCTTCAGATACAATATTGCCAGGGATGAAGTTGGGACGGAACCTCAGAACTGGTATGGAATGGAGAATGACAGCTTGGAAAAGTCCTAATGATCCATCCCCAGGAATCTTTTATTGGGGTCTATTGCTTTATAATTATCCTGAGTATTATCTGATGAAGGGAACAGAAAAGTTTGTCAGAATTGGACCATGGAATGGCCTACATTTCAGTGGTATACCAGATCAAAAGCCTAACTCCATTTATGATTACAACTACATATCCAAAAACGATGAGATATACTACACTTTCAGCCTCAAGAACGAGGCAGTGATCTCAAGATTGGTAATGAATCAAACCAGTTCTATGAGTTTTCGGTACGTATGGATGGAAGATGGACAATATTGGAAGTTCTATAAATCACTGCCAAAGGACAACTGTGACTTTTATGGAATCTGTGGAGTCTATGGCACTTGCACCATCACAGGCTCTCAAATATGTCAATGTTTATCAGGGTTCAGTCCCAAGTCACCACAAGCATGGAACTCATCTGACTGGTCTGATGGATGTGTTCGGAATAAGCCATTAAACTGCACTGAGAAAGGCAAGCATGGGTTTGTGAAAGTGAAAGGTATGAAAGTGCCAGATACTACAAATACTTGGGTAGATAAGACAATAAGTCTAGAAGAATGCAGACGGAATTGCTTAAATAATTGTTCTTGTATGGCCTATACTAATTCAAACATAAGTGGTGAAGGAAGTGGTTGTGTCATGTGGTACGGTGATCTAATTGATATTAGGCAGTTTGACAATGATGGACAGGATCTATATATTCGAATGCATGCTTCAGAAATAGAGTATTCAGACACTATACATTATCAAAACAGCGAAGGTAGTGAAGATGATCTTGATCTCCCATCACTTGACCTTTCAACAATAGTCAATGCCACTAATAACTTCTCAATAGAAAACAAGATTGGAGAAGGTGGTTTTGGACCAGTATACAAGGGAAAATTAGCAAGTGGAAAAGAAATTGCTGTGAAGAGGCTTTCAAGAAGCTCTGGACAAGGAATGACAGAGTTCAAGAATGAAGTGAAACTGATAGCAAAACTTCAGCACCGAAATCTTGTTAATCTTCTCGCTTGTTGCGTTCAGGAAGAGGACAGAATGCTAGTCTATGAATACATGACTAACCGTAGTTTGGATTGGATGATATTTGGTCTTCTTTATCTTCATCAAGATTCTAGATTGAGGATAATTCATAGAGATCTTAAAGCAAGTAATGTTCTACTTGATGACCAGATAAATCCAAAAATATCGGATTTTGGTATTGCTAGAATTTTTGGAGGAGATCAAACTGAAGGAAACACAAAACGAGTAGCTGGAACTTATGGTTACATGGCACCAGAATATGCAGCAGATGGTCTTTTTTCTGTAAAATCTGATGTTTTCAGTTTTGGTATTTTGCTGCTGGAGATTATAAGTGGAAAGAGAAATAGAGGTTTCTATCTTGAAAACCAATATCCTAACCTTGTAACACATGCATGGAGTCTATGGAAAGAGGGTAGGGCTATAGAGATGGTTGACTCAAGTATAGAGTACTCATGTGATTTATCAGAGGTTTTGCGTTGCATCCACGTCGGTCTCTTATGTGTCCAACAGCATACAGAGGATAGGCCTGTAATGTCTGCTGTGGTGCTAATGTTGGGGAGTGAAGGTGAATTGGCTGAGCCAAAAGAACCTGGTTTCTTCATAAAGAATGATCAAGTTGCAACAACTTCTTTCTCAGACCTGAGAGAAAAATCTAAAAGCATGGAAGAAGATTCAAAGTTTTCAACAATAGCACCATCAGTCTTTGATGGTGAAAATTATCAAATTTGGGCAATACGAATGGAAGCCTACCTAGAAGCTCTGGATCTATGGGAGGCAATTGAAGAGGATTATGAAATTCATGTTCTACCTGACAATCCAACGATGGCTCAAATCAAGAATCACAAGGACGGAAAAACCAGAAAAGCTAAGGCAAAGACATCCAAAGCCATATGGGATTATCTCAAAGAAGAATATGGTGTAGATGATCAAATTAAAGGCATGAAGGTGTTGAATCTCATTAAAGACTTTGAATTGCAGAAGATGAAGGAATCTGAAACTATCAAGGAGTACTCTGAGAGGCTTTTGAACATAGCAAATAGAGTAAGATTGCTTGGTTCTGAATTTAAGGACTCTCTTCTGGTTACCGTACCTGAAAGATTTAAAGCTACCATAACCACGTTAGAAAACACTAAGGATTTTTCCAAGATCACCTTGGTAGAGTTGCTAAATTCATTGCAAGCACAAGAAAAACGAAGGGCTATGAGAGAAGAAGGCTTTCTTGAGGAAGCCTTGCCTGCTAAACATGAAGACAGTTGGAAAAAGAAAAAAAAAAGAACCAACAACCAAATAAAGAAGGTGCTGTCAGAAATGAAAGCAAAGCAGGAAGCTCCAAGGGAAAGTATCCTCCTTGCAAGCATTGCAACAAGATGGATCATCCTCCATTCAAGTGTTGGAGAAGGCCTAACGCTAAATGAAGAAGATGCTCAAATGGTAAATGAAGAAGAGGAAGATCAACTTTTTGTTGCAACCTATTTTTCAACCAATGCTTCAAGTGAATCTTGGCTAATTGATAGGGGTTGTACTAACCACATGACCTTTGACATGGCATTCTTTAGAGATATGAGGCAAACTAATGTCACCAAAGTCAAAATAGGCAATGGTGAAAATGAGATGGAAAAGTCTTGCTCTAAAACCATTGGAGGAGGAGCAAACTGTTGTCTCACTCAACAAAAATGTGACAGGAATCTGGCACAAGAAGCTAAGACATCTTCATCATATGTTGGGTGTAAAGAGTTTTTCTTATTTGCAGCAGTGACTGCAACATTAGTTTTAATCCTTCTCAATGTGGTTGTGGTTTGCCATGAAGGCAAAACAATTTCTTTCATCAGGAAGATCGATAGGGCTGAGGACATGCCCCTTCATAGTGATGTACTTGTTTCCCCTTCTAGCTACAATGCTCCTCAACAGGTTCATATAATAATAGGTGATCATGTGGGAAGGGCCATGATCGTATCATGGGTGACCATTGACGAACCAGGAAACAATTTAGAGGACTTTCTTGACTATGAAGACGAAGAAGAGAAGGAGCCTAAAGGTGTTAATAAAGTCAACACTGAAGTTGTCAAGAAGGGTTATGTTAGAAAATTCAGAGACTTTTTACTGAAGCTAAATTGA 3687 0.3919 MDILSSLIFVACALIIPSLKVFIAADTIRLSQSISDGMTLVSKGETFELGFFSPEYSKNRYLGIWYKNITQTVVWVANGALNDSSGILTVNSTGNLVLRQHDKVVWYTTTPEKQARNPVAQLLDSGNLVVRDESETNSESYLWQSFDYPSDTILPGMKLGRNLRTGMEWRMTAWKSPNDPSPGIFYWGLLLYNYPEYYLMKGTEKFVRIGPWNGLHFSGIPDQKPNSIYDYNYISKNDEIYYTFSLKNEAVISRLVMNQTSSMSFRYVWMEDGQYWKFYKSLPKDNCDFYGICGVYGTCTITGSQICQCLSGFSPKSPQAWNSSDWSDGCVRNKPLNCTEKGKHGFVKVKGMKVPDTTNTWVDKTISLEECRRNCLNNCSCMAYTNSNISGEGSGCVMWYGDLIDIRQFDNDGQDLYIRMHASEIEYSDTIHYQNSEGSEDDLDLPSLDLSTIVNATNNFSIENKIGEGGFGPVYKGKLASGKEIAVKRLSRSSGQGMTEFKNEVKLIAKLQHRNLVNLLACCVQEEDRMLVYEYMTNRSLDWMIFGLLYLHQDSRLRIIHRDLKASNVLLDDQINPKISDFGIARIFGGDQTEGNTKRVAGTYGYMAPEYAADGLFSVKSDVFSFGILLLEIISGKRNRGFYLENQYPNLVTHAWSLWKEGRAIEMVDSSIEYSCDLSEVLRCIHVGLLCVQQHTEDRPVMSAVVLMLGSEGELAEPKEPGFFIKNDQVATTSFSDLREKSKSMEEDSKFSTIAPSVFDGENYQIWAIRMEAYLEALDLWEAIEEDYEIHVLPDNPTMAQIKNHKDGKTRKAKAKTSKAIWDYLKEEYGVDDQIKGMKVLNLIKDFELQKMKESETIKEYSERLLNIANRVRLLGSEFKDSLLVTVPERFKATITTLENTKDFSKITLVELLNSLQAQEKRRAMREEGFLEEALPAKHEDSWKKKKKRTNNQIKKVLSEMKAKQEAPRESILLASIATRWIILHSSVGEGLTLNEEDAQMVNEEEEDQLFVATYFSTNASSESWLIDRGCTNHMTFDMAFFRDMRQTNVTKVKIGNGENEMEKSCSKTIGGGANCCLTQQKCDRNLAQEAKTSSSYVGCKEFFLFAAVTATLVLILLNVVVVCHEGKTISFIRKIDRAEDMPLHSDVLVSPSSYNAPQQVHIIIGDHVGRAMIVSWVTIDEPGNNLEDFLDYEDEEEKEPKGVNKVNTEVVKKGYVRKFRDFLLKLN 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00369 1228 CDD PAN_AP_plant 335 419 - -
Vimu5g00369 1228 Pfam Domain of unknown function (DUF4219) 759 785 IPR025314 -
Vimu5g00369 1228 SMART ntp_6 341 420 IPR003609 -
Vimu5g00369 1228 SUPERFAMILY Protein kinase-like (PK-like) 446 709 IPR011009 -
Vimu5g00369 1228 SMART serkin_6 460 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00369 1228 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 520 717 - -
Vimu5g00369 1228 CDD B_lectin 31 149 IPR001480 -
Vimu5g00369 1228 Pfam Protein kinase domain 461 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00369 1228 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 18 700 - -
Vimu5g00369 1228 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 180 IPR036426 -
Vimu5g00369 1228 ProSiteProfiles EGF-like domain profile. 283 319 IPR000742 -
Vimu5g00369 1228 Pfam D-mannose binding lectin 72 175 IPR001480 -
Vimu5g00369 1228 Gene3D Hepatocyte Growth Factor 337 422 - -
Vimu5g00369 1228 Coils Coil 844 864 - -
Vimu5g00369 1228 Gene3D Transferase(Phosphotransferase) domain 1 536 720 - -
Vimu5g00369 1228 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 146 - -
Vimu5g00369 1228 ProSiteProfiles Bulb-type lectin domain profile. 25 143 IPR001480 -
Vimu5g00369 1228 SMART blect_4 31 149 IPR001480 -
Vimu5g00369 1228 Gene3D Phosphorylase Kinase; domain 1 423 535 - -
Vimu5g00369 1228 Gene3D - 20 146 IPR036426 -
Vimu5g00369 1228 Pfam gag-polypeptide of LTR copia-type 814 925 - -
Vimu5g00369 1228 ProSiteProfiles PAN/Apple domain profile. 338 421 IPR003609 -
Vimu5g00369 1228 SUPERFAMILY Purple acid phosphatase, N-terminal domain 1141 1186 IPR008963 GO:0003993|GO:0046872
Vimu5g00369 1228 Pfam S-locus glycoprotein domain 208 317 IPR000858 GO:0048544
Vimu5g00369 1228 Coils Coil 944 967 - -
Vimu5g00369 1228 ProSitePatterns Serine/Threonine protein kinases active-site signature. 559 571 IPR008271 GO:0004672|GO:0006468
Vimu5g00369 1228 Pfam PAN-like domain 338 406 IPR003609 -
Vimu5g00369 1228 ProSiteProfiles Protein kinase domain profile. 460 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00369 1228 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 424 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00369 Vimu-Chr5 3326166 3331559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00369 441 727 Receptor kinase-like Gene Family AT4G23230 56.090 2.99e-107 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vimu5g00369 Pkinase 5.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00369 - - gmx:100775648 1227.62