Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00366 ATGGGTGTTATTCATGCTTTTGTGATTATATTTGCATGCATACTTGTTCTCTCACTAGAAATTTCAGGAGCCAATGATTCAATCAACGTGGTCCAGTTTCTGAGGGATGGGAATACTTTGGTATCAAAAGGTGGAAAGTTTGAACTTGGATTCTTCAGCCCTGGTAGTTCCCAGAAACGTTATTTGGGAATTTGGTACAAGAATATCCCAGTTCCAACGTATGTTTGGGTTGCTAATGGGGCCAACCCCATCAATGATTCCTCAGGCATCTTAACAGTGAACACCACAGGCAATCTTGTTCTCACCCAAAATGGTTCTCTTGTTTGGCACTCCAACAACTCTCACAAACAAGCACAGAATCCGGTGGTAGAAATGTTGGACAGTGGCAATCTTGTGATAAGAAATGAGGGAGAAACAAACCCAGAAGAGTATTTGTGGCAAAGCTTTGATTATCCATCTGATACACTCTTGCCAGGGATGAAGTTAGGATGGGACCTCCGAACTGGTTTGGAACGGAAATATACAGCATGGAGGAGTCAAGATGATCCATCCCCAGGAGATGTATCTCGGGTTCTGAAACTCTATAGCTATCCTGAGGTTTATATGATGAAGGGTACACAAAAGTTGCTGAGGTATGGACCATGGAATGGCGAATATTTCAGTGGAATGCCAGATCTACTGAATAACACCATTTTCGGCTTGAGTTTTGTCAGCAATGAAGATGAGATTTACTACACGTATACCCTCGTCAATGATTCTATTCCCACCAGAACTGTTACAAACCAATCAGGTACTATTGTTCGTTATGTGTGGAAGGAGGATGAGAAAACATGGAAAATATACAGAAAGTACCCGAAAGAGTCTTGCGACAATTATGACTCCTGTGGACCTAACGGATTATGTGTACGAACTCAATCACAGCCTTGCAATTGTTTGAAAGGTTTCAGTCCAAAATCACCAGAAAATTGGAACTCGTCGGATTGGAGTGAAGGATGTGAGCGCAATAAAGCGTTGAATTGCAATAGTGATGTGTTTGTCCTATTTAAAGGGCTGAAAGTTCCAGCCACTACAGATACTTGGTTGAATAAGAGTATTGGTCTAAAGGAATGCAAAGTGAAGTGCTTGAAAGATTGTTCTTGCATGGCTTATACTAATTCAGATATCAGAAATGGAGGTAGTGGATGTGTCTTGTGGTTTGGAGATCTCATTGACATGAAACAGATTGAAACTGGTGGACAAGACCTGTATATCAGGATGAATGCTTCCGAGGCAGATATAAGTAAAAGATATGTGGATGATCTGGATGTCCAACTGTTTGATCTAGTAACAATTGGAAAGGCCACTAATAACTTCTCCACAGAGAATATAATAGGAGAAGGTGGTTTTGGACATGTATACAAGGGAATAATCGACGGGAAAGAAATTGCTGTAAAGACTCTATCAAGAAGCTCATGGCAAGGTGTGACAGAGTTCATCAATGAAGTAAACTTGACTGCAAAACTTCAGCATCGGAATCTTATCAAACTTCTTGGTTGCTGCATTCGAGGAGAACAAAGAATGCTCATTTATCAGTACATGGAAAATGGCAGCCTAGACTCCCTTATTTTTGATGATGAAAAAGGTAAATTTCTTGAGTGGCCTCAACGGTTCCAAATAATTTGCGGAATTGCAAGGGGCCTTATGTACCTTCATCAAGATTCCCCACTGAGGATCATCCACAGAGATCTCAAAGCTAGTAACATCTTACTCGATAAAACGTTCAATCCGAAAATATCAGACTTTGGTGTGTCGAGATCTTTTGGAGTAGACCAATTTGAAGGAAGCACAAGTAGAGTAGTGGGGACCTGTGGGTATATGGCGCCAGAATATGCAGTTGATGGATTATTTTCTGAAAAATCTGACGTATTTAGCTTTGGAATTTTGGTGTTGGAGATTGTCTGTGGGAAGAGAAACAGAGGACTTTATCAAACAGATAAGAGTCTTAACCTTGTTGCTCATTACCCAGATGATAGGCCTATAATGAAGTCTGTGATTCTAATGTTGGAGAGTCACATTGCACTGGCTGAGCCAAAAGAACCTGGTTTCCTTTCGAGAAATGTGTTACCTAAAGATTTAGGCTCAAATACGCAAGACACAAGTTCAACCAACGAAGTGACCATTACTCTGTTAGAACCTCGATGA 2181 0.4076 MGVIHAFVIIFACILVLSLEISGANDSINVVQFLRDGNTLVSKGGKFELGFFSPGSSQKRYLGIWYKNIPVPTYVWVANGANPINDSSGILTVNTTGNLVLTQNGSLVWHSNNSHKQAQNPVVEMLDSGNLVIRNEGETNPEEYLWQSFDYPSDTLLPGMKLGWDLRTGLERKYTAWRSQDDPSPGDVSRVLKLYSYPEVYMMKGTQKLLRYGPWNGEYFSGMPDLLNNTIFGLSFVSNEDEIYYTYTLVNDSIPTRTVTNQSGTIVRYVWKEDEKTWKIYRKYPKESCDNYDSCGPNGLCVRTQSQPCNCLKGFSPKSPENWNSSDWSEGCERNKALNCNSDVFVLFKGLKVPATTDTWLNKSIGLKECKVKCLKDCSCMAYTNSDIRNGGSGCVLWFGDLIDMKQIETGGQDLYIRMNASEADISKRYVDDLDVQLFDLVTIGKATNNFSTENIIGEGGFGHVYKGIIDGKEIAVKTLSRSSWQGVTEFINEVNLTAKLQHRNLIKLLGCCIRGEQRMLIYQYMENGSLDSLIFDDEKGKFLEWPQRFQIICGIARGLMYLHQDSPLRIIHRDLKASNILLDKTFNPKISDFGVSRSFGVDQFEGSTSRVVGTCGYMAPEYAVDGLFSEKSDVFSFGILVLEIVCGKRNRGLYQTDKSLNLVAHYPDDRPIMKSVILMLESHIALAEPKEPGFLSRNVLPKDLGSNTQDTSSTNEVTITLLEPR 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00366 726 Pfam Protein tyrosine and serine/threonine kinase 453 651 IPR001245 GO:0004672|GO:0006468
Vimu5g00366 726 ProSitePatterns Protein kinases ATP-binding region signature. 457 478 IPR017441 GO:0005524
Vimu5g00366 726 SMART serkin_6 451 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00366 726 ProSiteProfiles PAN/Apple domain profile. 340 421 IPR003609 -
Vimu5g00366 726 PIRSF SRK 1 433 IPR024171 GO:0004674
Vimu5g00366 726 PIRSF SRK 425 668 IPR024171 GO:0004674
Vimu5g00366 726 PIRSF SRK 664 726 IPR024171 GO:0004674
Vimu5g00366 726 ProSiteProfiles Bulb-type lectin domain profile. 25 146 IPR001480 -
Vimu5g00366 726 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 664 - -
Vimu5g00366 726 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 149 - -
Vimu5g00366 726 Pfam S-locus glycoprotein domain 211 319 IPR000858 GO:0048544
Vimu5g00366 726 Gene3D Phosphorylase Kinase; domain 1 426 525 - -
Vimu5g00366 726 SMART ntp_6 340 419 IPR003609 -
Vimu5g00366 726 CDD PAN_AP_plant 338 418 - -
Vimu5g00366 726 SMART blect_4 31 152 IPR001480 -
Vimu5g00366 726 Pfam D-mannose binding lectin 73 178 IPR001480 -
Vimu5g00366 726 FunFam Lectin-domain containing receptor kinase A4.3 526 686 - -
Vimu5g00366 726 Pfam PAN-like domain 340 405 IPR003609 -
Vimu5g00366 726 CDD B_lectin 31 152 IPR001480 -
Vimu5g00366 726 Gene3D - 20 149 IPR036426 -
Vimu5g00366 726 ProSitePatterns Serine/Threonine protein kinases active-site signature. 571 583 IPR008271 GO:0004672|GO:0006468
Vimu5g00366 726 ProSiteProfiles Protein kinase domain profile. 451 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00366 726 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 183 IPR036426 -
Vimu5g00366 726 Gene3D Transferase(Phosphotransferase) domain 1 526 692 - -
Vimu5g00366 726 FunFam Os08g0179000 protein 422 525 - -
Vimu5g00366 726 SUPERFAMILY Protein kinase-like (PK-like) 434 676 IPR011009 -
Vimu5g00366 726 MobiDBLite consensus disorder prediction 706 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00366 Vimu-Chr5 3299260 3302730 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00366 422 699 Receptor kinase-like Gene Family AT4G23190 47.988 1.62e-90 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu5g00366 PK_Tyr_Ser-Thr 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00366 - - vra:106754325 1417.14