Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00365 ATGGCCATCAGTTGGTTGAACAACTCAGAGAAATCATTGGCAGAAGAACTCCGTGAAGAACAAGTGGATGATCTTGACGTCCAATTGTTTGATCTATTTACAATTGCAACTGCCACTAACAACTTCTCAATAGAAAATAAGATTGGACAAGGTGGTTTTGGACCTGTGTACAAGGGAGTATTACTTGATATGCAAGAAATTGCTGTAAAGACTCTATCAAGGAGCTCATGGCAAGGAGCGACAGAGTTCATAAATGAAGTCAAATTGATTGCAAAACTTCAGCACCGAAATCTTGGACAAGAAAAAATGTTAGTTTATGAATACATGGCAAATGGCAGCCTAGATTCCTTCATATTTGGGCTTCTGTATCTTCATCAAGATTCCCGATTAAGGATTATTCATAGAGATCTTAAAGCAAGCAACGTACTTCTTGATATAAATTTGTGCCCAAAAATATCGGATTTTGGATTAGCCAGAATTTTTGGAGGGGACCAAATTGAAGGAAACACAAGAAGAGTAGTTGGGACTGGGTATATGGCACCAGAGTATGCTGTCGATGGATTATTTTCTGTGAAATCAGATGTCTTCAGCTTTGGCATTTTAGTGTTGGAGATTGTATGTGGAAAGAAAAACAGAGGACTTTATCACACAGACGAGAGTCTTAACCTAGTTGGTCATGCATGGACTTTATGGAAAACTGGGAGGGCATTAGAGTTGGTTGATTCGAGCATGAAGGAGTCATACGTTATACCAGAAGTTCTGCGATGTCTCCATCAATACCCAGAAGATAGGCCTACAATGGCGTCCGTGATTCTAATGTTGGAGACTCAAATGGAACTGGTTGAGCCCAAAGAACATGGTTTTACTTCAAGAAATGTTTTGGCCGAAGAAGATTTACGTTTCTTCGTCTCCTTCTTCTCCATCTTTTTCTTCTCTTCCACTCCATTACAACTACAAATCAAGATCGCCTCCATCTCCATTCAACAAGGTCGCCGCTTCACTCAGTCAAGTCGCCTCCATCCTTGTTTAACCAGGCCGCCCTCGCCACCACCGCGCACCGTCACCACCACGCACAACCACCATTGTGCATTGTCACCACCACGCACAACCACCACTGCCTACTTCTACCAAATTCCAATTCTCGCAGAGCGCAAGCAAATTAGAAGAGCCAGGAGAACAAAATTCACAGAGCGCACCCTTACTCGAATTGCTCCAGAGTGCAAATTTAAAATTCGCAGAGCGCACCAGACTATGTGCGCTAAGCGAATGGAAGCAGTTGAACTGCAACCAGAAAATGAAATTCGCATAGCGAACACACATCTTTTAATGAAAATTAACTGGCTCTTAAGAGACGTGACAGAGAGGCAGAAATGTTATTTCCTGACACGAAAAATAGAAGAACGCTCTGGAGAACTGGAGAAGATCGTTAGGAGACCCTTCAAGACATCAAGACTTCACTTTCTGCAAGGAATTGCTGTAAAGATCGCAGAGCGCACAGCTGAAGTGCGCTCAGCGACCAGAGTATTTTATAAGGCAATGATTTGCTCGCATAGCGTGCCACATGCGCTTTGTGTGAGAGAAAAAGAATTTGTTAATTATATCGTGGTTCGCACAGCACACCAAATGCGCTTTGCGACTTAA 1641 0.4266 MAISWLNNSEKSLAEELREEQVDDLDVQLFDLFTIATATNNFSIENKIGQGGFGPVYKGVLLDMQEIAVKTLSRSSWQGATEFINEVKLIAKLQHRNLGQEKMLVYEYMANGSLDSFIFGLLYLHQDSRLRIIHRDLKASNVLLDINLCPKISDFGLARIFGGDQIEGNTRRVVGTGYMAPEYAVDGLFSVKSDVFSFGILVLEIVCGKKNRGLYHTDESLNLVGHAWTLWKTGRALELVDSSMKESYVIPEVLRCLHQYPEDRPTMASVILMLETQMELVEPKEHGFTSRNVLAEEDLRFFVSFFSIFFFSSTPLQLQIKIASISIQQGRRFTQSSRLHPCLTRPPSPPPRTVTTTHNHHCALSPPRTTTTAYFYQIPILAERKQIRRARRTKFTERTLTRIAPECKFKIRRAHQTMCAKRMEAVELQPENEIRIANTHLLMKINWLLRDVTERQKCYFLTRKIEERSGELEKIVRRPFKTSRLHFLQGIAVKIAERTAEVRSATRVFYKAMICSHSVPHALCVREKEFVNYIVVRTAHQMRFAT 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00365 546 SUPERFAMILY Protein kinase-like (PK-like) 27 276 IPR011009 -
Vimu5g00365 546 Gene3D Phosphorylase Kinase; domain 1 4 108 - -
Vimu5g00365 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Vimu5g00365 546 FunFam Os07g0541700 protein 109 176 - -
Vimu5g00365 546 Gene3D Transferase(Phosphotransferase) domain 1 109 294 - -
Vimu5g00365 546 Pfam Protein tyrosine and serine/threonine kinase 120 271 IPR001245 GO:0004672|GO:0006468
Vimu5g00365 546 Pfam Protein tyrosine and serine/threonine kinase 43 118 IPR001245 GO:0004672|GO:0006468
Vimu5g00365 546 ProSiteProfiles Protein kinase domain profile. 42 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00365 546 SMART serkin_6 42 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00365 546 MobiDBLite consensus disorder prediction 339 363 - -
Vimu5g00365 546 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 16 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00365 Vimu-Chr5 3288303 3295003 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00365 30 288 Receptor kinase-like Gene Family AT4G23230 52.843 9.27e-94 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vimu5g00365 PK_Tyr_Ser-Thr 5.2e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00365 - - gmx:100802962 459.529