Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00354 ATGGCTCCTGAATATGCTATGGAGGGACTATTTTCAGTGAAATCTGATGTTTTCAGCTTTGGAGTTCTTGTTCTAGAAATCATTTCTGGGAGAAAGAATGGTGGATTCTACCTGTCAGATGGTGAAAATCTTCTTGCTTTGAGAACATGGTATGAAGGAAAATGTTTGGAATTGATGGATTCAATGCTGGAAAAATCCTTCATAGGAAGTGAAGTAGAGAGGTGCATACAGATTGGTTTGTTGTGTGTTCAAGAAGATGCAAGAGATAGACCAACCATGTCCGATGTTGTGCCATTCCAAAACCCAGGCACCCAACAATTTCAGTTGGAAGAACGGCCACAGAGGAAGTCCCTACATCAAGAAGTTCCAAGAAACTTTCCATTAGTGATATAA 393 0.402 MAPEYAMEGLFSVKSDVFSFGVLVLEIISGRKNGGFYLSDGENLLALRTWYEGKCLELMDSMLEKSFIGSEVERCIQIGLLCVQEDARDRPTMSDVVPFQNPGTQQFQLEERPQRKSLHQEVPRNFPLVI 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00354 130 Gene3D Transferase(Phosphotransferase) domain 1 1 122 - -
Vimu5g00354 130 Pfam Protein tyrosine and serine/threonine kinase 1 97 IPR001245 GO:0004672|GO:0006468
Vimu5g00354 130 SUPERFAMILY Protein kinase-like (PK-like) 1 101 IPR011009 -
Vimu5g00354 130 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00354 Vimu-Chr5 3187614 3188130 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00354 1 122 Receptor kinase-like Gene Family AT3G45860 50.000 1.98e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu5g00354 PK_Tyr_Ser-Thr 4.2e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00354 - - var:108339140 186.037