Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00353 ATGGCTGTGAAACGCATTACTAGCTATGTGTTTCAATCATTGCAGCAGATAACACAATTAAGCAAGTACTTCATCATAGGAATACAAAGAAACATGAGATCAATATGCTATACTTTCTTGTTATTGCTGAGTTTCAGATCATTCATCACAAAGGCCGAAGAAGAAGCAAACCTGGGAAGTAACTGTGTAAACACTACCCAGCAGACTTTAAGCAGTGCATACCAAACCAACCTTGATAGAATCCTAACCTGGATGCGCTTTGATGCAGCCACAAGCCATGGTTATAACCACACCACCATAGGCACCAATAGCTCTGTGTATGGCCTCTATGATTGTGGCGGTGACGCGGTTGGATACTTTTGTCAATTTTGTGTTTCCACTGCTGCAAACGAAGCCCCTCAGCTCTGCCCCAATAGGGTATCTGCTGTGCTGTGGAATGATTACTGCGTTATAAGGTACTCAAATGAGGACTTCTTTGGGAAAGCTATGACATCCCAAATATGGCATAGTCTTGGAACAAGGAACATATCCAATATAACAGAGATTCAGAAAGGTGAGAATTTTGTGACAAGTTTGATCAGAAAAGCAACTAATGAAACCAACCAGTTGTACTATAAGGAAGGCTTCAATTTGAGTGCCACTGAGAGTAGGTATAGCGTGGTGCAATGCACTAGAGATCTCACAAATGAAGCCTGCAGACAGTGTTTGGAGGACATACTGGCTGAAGTTCCCAAATGTTGTGAACAAAAAGTAACATGGATGGTTTGGTCTGGAAGTTGTTTGATAAGGTATGATGATCATATGTTCTACCTTCTTGCCAACCAACCACCTTCAGCTCCCGAGCCCAATGCACAAGGGCTTCCTCTACCTTCATCACATAAAATTCAATCAGAAGAAATGTGGAACCCAGACCTGCCTAGAATCCCATTAATAACAATTCTACAGAGTACTGATAACTTTTCAGAAGCATCTAAACTAGGAGAAGGTGGATTTGGCCCCGTGTACAAGGTTGGAACTCTTCCTGATGGAAACCAAATTGCAGTCAAAAGACTCTCCCAATTTTCTGGTCAAGGCTCGGAGGAGTTCAACAATGAAGTGATGTTTATAGCTAAATTGAGGCATCGCAACCTTGTAAGACTTTTAGCATGTTGCTCGGAGGAAAATGAAAAGATACTTGTGTATGAGTATTTGCCAAATAAAAGTCTCGACTTTCACCTATTTGATGTTGAGAAAAGAAAACAATTCGATTGGAAACTAAGATCAAGCCTTATCAGTGGAATAGCAAAAGGTATTTTATACCTTCATGAGGACTCTCAACTCAGAGTAATTCATAGAGATCTCAAAGCAAGCAACGTTCTATTAGACCATGACATGAATCCCAAAATATCAGATTTTGGATTGGCAAGGGCATTTGAAGTAGGACAGAACCAGGCAAATACAAAACGAGTAATGGGAACTTAG 1461 0.4079 MAVKRITSYVFQSLQQITQLSKYFIIGIQRNMRSICYTFLLLLSFRSFITKAEEEANLGSNCVNTTQQTLSSAYQTNLDRILTWMRFDAATSHGYNHTTIGTNSSVYGLYDCGGDAVGYFCQFCVSTAANEAPQLCPNRVSAVLWNDYCVIRYSNEDFFGKAMTSQIWHSLGTRNISNITEIQKGENFVTSLIRKATNETNQLYYKEGFNLSATESRYSVVQCTRDLTNEACRQCLEDILAEVPKCCEQKVTWMVWSGSCLIRYDDHMFYLLANQPPSAPEPNAQGLPLPSSHKIQSEEMWNPDLPRIPLITILQSTDNFSEASKLGEGGFGPVYKVGTLPDGNQIAVKRLSQFSGQGSEEFNNEVMFIAKLRHRNLVRLLACCSEENEKILVYEYLPNKSLDFHLFDVEKRKQFDWKLRSSLISGIAKGILYLHEDSQLRVIHRDLKASNVLLDHDMNPKISDFGLARAFEVGQNQANTKRVMGT 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00353 486 Gene3D Transferase(Phosphotransferase) domain 1 397 486 - -
Vimu5g00353 486 SUPERFAMILY Protein kinase-like (PK-like) 293 486 IPR011009 -
Vimu5g00353 486 FunFam Cysteine-rich receptor-like protein kinase 10 288 396 - -
Vimu5g00353 486 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 397 486 - -
Vimu5g00353 486 Gene3D Phosphorylase Kinase; domain 1 288 396 - -
Vimu5g00353 486 ProSiteProfiles Gnk2-homologous domain profile. 56 158 IPR002902 -
Vimu5g00353 486 Pfam Protein kinase domain 321 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00353 486 ProSiteProfiles Protein kinase domain profile. 320 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00353 486 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 66 486 - -
Vimu5g00353 486 ProSiteProfiles Gnk2-homologous domain profile. 164 269 IPR002902 -
Vimu5g00353 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672|GO:0006468
Vimu5g00353 486 Gene3D - 163 269 IPR038408 -
Vimu5g00353 486 Gene3D - 55 158 IPR038408 -
Vimu5g00353 486 SMART serkin_6 320 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00353 486 FunFam Cysteine-rich receptor-like protein kinase 28 58 157 - -
Vimu5g00353 486 Pfam Salt stress response/antifungal 62 155 IPR002902 -
Vimu5g00353 486 Pfam Salt stress response/antifungal 187 266 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00353 Vimu-Chr5 3185258 3187477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00353 62 486 Receptor kinase-like Gene Family AT4G05200 40.373 5.87e-107 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu5g00353 Pkinase 7.8e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00353 - - var:108339140 872.848