Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00350 ATGGCTCCAGAATATGTTATGCAAGGACTGTTTTCAGTGAAATCTGATGTCTTCAGCTTTGGAGTACTTGTTCTAGAGATCATTTACGGGAGAAAGAACAGTGGATTGTGTATGTCAGAACATGGAAAATGTTTGGAAACGATTGATCCAATGCTAGAAAAGTCCTTCATAGGCAGTGAAATTGAGAGGTGTATACAGATTGGTTTGTTGTGTGTTCAAGAAGATGCAAAAGATAGACCAACAATGTCTCAGGTTGTTTTAATGCTAGCAAGTGATACAATGATTCTTCCAAAACCCAAGCACCCTGCATTCTCAATTGGAATAATGGCCTCTGAGGAAGTGTATACATCAAAAAGTTCCAAGAATGTTTCTAATAATGATCTAACTGTCTCTCTTTCTTTACCAAGGTGA 411 0.3771 MAPEYVMQGLFSVKSDVFSFGVLVLEIIYGRKNSGLCMSEHGKCLETIDPMLEKSFIGSEIERCIQIGLLCVQEDAKDRPTMSQVVLMLASDTMILPKPKHPAFSIGIMASEEVYTSKSSKNVSNNDLTVSLSLPR 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00350 136 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 117 - -
Vimu5g00350 136 Gene3D Transferase(Phosphotransferase) domain 1 1 97 - -
Vimu5g00350 136 Pfam Domain of unknown function (DUF3403) 91 136 IPR021820 GO:0004674
Vimu5g00350 136 Pfam Protein tyrosine and serine/threonine kinase 1 88 IPR001245 GO:0004672|GO:0006468
Vimu5g00350 136 SUPERFAMILY Protein kinase-like (PK-like) 1 122 IPR011009 -
Vimu5g00350 136 ProSiteProfiles Protein kinase domain profile. 1 104 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00350 Vimu-Chr5 3168944 3169483 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00350 1 119 Receptor kinase-like Gene Family AT4G23140 47.482 1.04e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu5g00350 PK_Tyr_Ser-Thr 4.1e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00350 - - cam:101497251 185.652