Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00342 ATGCCAGTCCTAGAAACACTTGGTGGTGCTCTTTTTGGTGCTGTTCTTCAGGTACTATTTCACAAGCTGGATTCTCATCAAGTTCTAGACTACTTTCGTGGGAGAATGCTCGATGAGAAGCTTCTGAAAAATTTGAAGAGGAAGTTGGTGTCCATGAATGCTGTGGTTGATCATGCAGAACTAAAGCAGTTCAGAAATGAATATGTTAAAACGTGGCTTGATGATGTCAGAGACGTGTTGCTTGACACAGAGGATCTGCTGGATGAAATAGAACTTGAATATCAGAGCAGTGCTAGCAAGGTACGCACTTTTGAATCCAAGCTAAAAGAAGTCCTTGATGACCTTGAATTTCTTTTAAGCCAAAAGGATGATCTAGGTCTGAAAAATGCTGGTGGTGTGGGATACGAATTGGGTAATAAGGTGTTAGAGAGAAAAAATGAATCCTCGTCATTGGTGGCTGAACATATTATTTGTGGCAGAGACGAGGACAAAGAAATTATCCTTAATTGGCTGACTTCAAGCCATGACAATCTTAACCAGCTGTCAATACTTGCTATTGTGGGTATGGGTGGGATGGGTAAGACCACACTTGCCCAACATTTATACAATGACCCAAAGATGAAGGAAGCTGGATTTGATGACAAAGCTTGGGTTTGTGTTTCTGATGAATTTGATGTTTTGAAAGTATCAAAAGCCATTATTGGGGCTTTGACTAAATCAAAAGATGATAGTGAAGACATAGAAATGGTTCATGGAAAATTAAAAGAAAAATTGACAGGAAGGAAGTTTCTTCTGGTTCTGGATGATGTTTGGAACGAAGACAGAAACCTATGGAAAACATTGCAAACTCCTCTTCGATATGGAGCTAAAGGAAGTAAAATTCTTCTCACAACACGCAGTAACAAAGTGGCTTCTATCATGCAGTCAAGCTACGTACACCAACTAAAGCAATTACAAAAACATTACAGTTGGCAAGTATTTGCTAAAAATGCATTGCAAGATGATACCTCTATGTTGAATTGTGAGTTGGAGGAGATTGGTATGAAGATAGTTGAAAAGTGCAAAGGGTTGCCTCTAGCCCTTGAAACGCTGGGATGTCTTTTACACACAAAGTCATCTGTTTCAGAGTGGGAAGGTGTGCTGACAAGCGAGATATGGGACTTATCCATCGAAGATAGTAAAATCATCCCTGCTTTGCTGTTGAGTTATTACCATCTTCCTTCTCACCTCAAGAGATGTTTCGCTTACTGTGCATTATTTCCCAAAGATCATAAGTTTGACAAGGAGACCTTAATTCTCTTATGGATGGCTGAAAATTTTCTACAATGCTCTCAGCAAAGCAAGTGTCCAGAAGAAGTAGGTGAACTATACTTCAATGATCTGTTATCAAGGTCATTCTTTCAACAATCAATTAAAGACAACGAAACATGTTTTCTCATGCATGACCTTCTCAATGATTTGGCAAAATATGTTTCTGGTGAAATATGCTTCAGGTTGGGAGTTGATAGAGCAGAAAGAGTACCAAAGACAACCCGTCACTTTTCAACGGTAATCAATCCTATTCAATATCCTAAGAGTTTATGTGATGCTAAAGGGCTACGGACATTTATATCCTTTTGGGGGAACTGTGAGATTTCAATACAAGAATTGATTTCCAACTTTAAGTTCTTACGGGTCTTGTCTTTGCCTTGCTTTAAAGTAAAGGATGTGTCTGACACTATAGCTGATCTTAAGCATCTCCGTTCATTAGACCTTTCAAACACAGGCATAACTAAACTTCCTGACTCAACTTGTTCACTCTGTAACTTGCAAGTATTGAAGCTGAACAAGTGTTTCAATTTGCAGGAGCTGCCCTCGAATTTGCATCAACTCACTAGTTTGCGCCGCCTTGAACTTGTGGGAACTACTTTAAGAAAGGCTCCAGTTCATTTAGGAAAATTGAAGAATCTTCGAGTATGGATGGGTAGGTTTGAGGTTGGCAAAAGTAGTCAGTCCAATATTCAACTTGGAGAAATTGAGCTTCACGGACAATTGTCAATTAGAAGTCTTGAAAATATTGTCAATCCCTATGATGCATTGGCGGCAAATTTGAAAAATAAAAAACATCTTGTGGGGCTAAATTTAGAATGGAGTTTGAAGCGGAACAATGACGACTCAATAATAGAAAGAGAAGTACTTGAGAATCTGCAACCTTTCAGAAAATTGAAGCATTTGTTAATCGATGGGTATGGTGGCACGCAATTTCCACGTTGGTTATCTGATAATTCTCTATTGAATGTGGAGTCCTTAACCTTGAATAACTGTAGACATTGCCAATTGTTGCCTTCCCTAGGACTTTTGACATTTCTCAAGCACTTGACAATTCATGGCCTTGATTGCATAGTCAGGATAGATGCTGACTTTTACGGGAATAGCTCCTTCGCATTTGCATCCTTGGAAACGTTGAGCTTTAATGATATGAAGGAATGGGAAGAATGGCAATGCATGACGGGTGCTTTTCCAAGTCTTCATTGTCTTTCTGTGATGAATTGTCCTAAACTGAAAGGGAACTTGCCAGTGCAACTTTCTCGCATAAAAAAGCTAACTATTGGTCAATGCAAACAACTTGTGGCTTCGATTCCCAAGGCCATAGAAATTGAAGGTGTGAAGATGGAGCCATCTTCATTTGATATGATAGAGCCCCTCGTATTTGATACTCCTCTTGAATCCTTGAGTATTTATTCATGTCCAGGCATGAATATTCCCACAAACCATTGGTACCCTTTGCTTGTAGAGTTGGATATTAGTCAATGTTGTGACTCGCTCACAAACTTCCCTCTAGACATATTCCCAAAACTATGCGACCTTTGTTTGGATGAGTGTCATAACCTACAGATGATATCTCAGGAGCACTGTCATAATAATTTGAAGACTCTGAGCATTGAAAAATGCTCTCAATTTGAATCATTTCCCAATGAAGGATTATTTGCACAGAAGCTGGAGAGATTTCATATTGAAGGATTGGAGAAATTGAAATCAATGCCTAAAAGCATGTCTGTCCTCCTTCCATCCCTTAATTATTTGTCAATACGCAATTGTCCAGGAGTGGAGTTATCCGAGGGATGTTTGCCAACAAATCTAAAAGAAATGCGTCTCAAGAATTGCTCAAAACTTGTTGCCTCACTAAAGGGGGTTTGGGGAACCAACACTTCTCTAAAATCCTTGTATATTGGCGAAGTGGATGTGGAGTTTTTCCCTTATGAAGGTTTACTCCCACTCTCTCTTACTAATCTAGCAATATATGATTGTCCAAATCTTAAGAAACTCAGCTGCAATGCTCTCTCTCGTCTCTCTTCTCTTGAGAAATTGGATCTTTTGAGTTGTCCCGGCCTCCAATGCTTGTCAGAGGAGGGTCTGCCTAAATCCATTTCAGAACTCCGAATTAAAAATTGTCCATTGCTCAAACAACGGTGCAAGAAACAAGAAGGTGAAGATTGGGAAAAGATTGCTCACATTAAATACATAGACTTTGATTAA 3516 0.3925 MPVLETLGGALFGAVLQVLFHKLDSHQVLDYFRGRMLDEKLLKNLKRKLVSMNAVVDHAELKQFRNEYVKTWLDDVRDVLLDTEDLLDEIELEYQSSASKVRTFESKLKEVLDDLEFLLSQKDDLGLKNAGGVGYELGNKVLERKNESSSLVAEHIICGRDEDKEIILNWLTSSHDNLNQLSILAIVGMGGMGKTTLAQHLYNDPKMKEAGFDDKAWVCVSDEFDVLKVSKAIIGALTKSKDDSEDIEMVHGKLKEKLTGRKFLLVLDDVWNEDRNLWKTLQTPLRYGAKGSKILLTTRSNKVASIMQSSYVHQLKQLQKHYSWQVFAKNALQDDTSMLNCELEEIGMKIVEKCKGLPLALETLGCLLHTKSSVSEWEGVLTSEIWDLSIEDSKIIPALLLSYYHLPSHLKRCFAYCALFPKDHKFDKETLILLWMAENFLQCSQQSKCPEEVGELYFNDLLSRSFFQQSIKDNETCFLMHDLLNDLAKYVSGEICFRLGVDRAERVPKTTRHFSTVINPIQYPKSLCDAKGLRTFISFWGNCEISIQELISNFKFLRVLSLPCFKVKDVSDTIADLKHLRSLDLSNTGITKLPDSTCSLCNLQVLKLNKCFNLQELPSNLHQLTSLRRLELVGTTLRKAPVHLGKLKNLRVWMGRFEVGKSSQSNIQLGEIELHGQLSIRSLENIVNPYDALAANLKNKKHLVGLNLEWSLKRNNDDSIIEREVLENLQPFRKLKHLLIDGYGGTQFPRWLSDNSLLNVESLTLNNCRHCQLLPSLGLLTFLKHLTIHGLDCIVRIDADFYGNSSFAFASLETLSFNDMKEWEEWQCMTGAFPSLHCLSVMNCPKLKGNLPVQLSRIKKLTIGQCKQLVASIPKAIEIEGVKMEPSSFDMIEPLVFDTPLESLSIYSCPGMNIPTNHWYPLLVELDISQCCDSLTNFPLDIFPKLCDLCLDECHNLQMISQEHCHNNLKTLSIEKCSQFESFPNEGLFAQKLERFHIEGLEKLKSMPKSMSVLLPSLNYLSIRNCPGVELSEGCLPTNLKEMRLKNCSKLVASLKGVWGTNTSLKSLYIGEVDVEFFPYEGLLPLSLTNLAIYDCPNLKKLSCNALSRLSSLEKLDLLSCPGLQCLSEEGLPKSISELRIKNCPLLKQRCKKQEGEDWEKIAHIKYIDFD 1171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00342 1171 Coils Coil 73 93 - -
Vimu5g00342 1171 PRINTS Disease resistance protein signature 183 198 - -
Vimu5g00342 1171 PRINTS Disease resistance protein signature 575 591 - -
Vimu5g00342 1171 PRINTS Disease resistance protein signature 257 271 - -
Vimu5g00342 1171 PRINTS Disease resistance protein signature 354 368 - -
Vimu5g00342 1171 ProSiteProfiles Leucine-rich repeat profile. 579 600 IPR001611 GO:0005515
Vimu5g00342 1171 FunFam Probable disease resistance protein At1g61300 140 311 - -
Vimu5g00342 1171 Gene3D Ribonuclease Inhibitor 665 875 IPR032675 -
Vimu5g00342 1171 Gene3D Ribonuclease Inhibitor 526 654 IPR032675 -
Vimu5g00342 1171 FunFam Probable disease resistance protein At1g63360 403 490 - -
Vimu5g00342 1171 Gene3D - 18 119 - -
Vimu5g00342 1171 PANTHER DISEASE RESISTANCE PROTEIN RP 42 866 IPR044974 GO:0006952
Vimu5g00342 1171 Pfam Rx N-terminal domain 13 100 IPR041118 -
Vimu5g00342 1171 Gene3D - 138 313 IPR027417 -
Vimu5g00342 1171 Pfam NB-ARC domain 161 381 IPR002182 GO:0043531
Vimu5g00342 1171 SUPERFAMILY L domain-like 893 1163 - -
Vimu5g00342 1171 Gene3D - 317 401 IPR042197 -
Vimu5g00342 1171 Gene3D Ribonuclease Inhibitor 894 1169 IPR032675 -
Vimu5g00342 1171 Gene3D - 402 490 IPR036388 -
Vimu5g00342 1171 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 417 IPR027417 -
Vimu5g00342 1171 SUPERFAMILY L domain-like 480 867 - -
Vimu5g00342 1171 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00342 Vimu-Chr5 3132922 3136437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00342 184 378 WRKY Transcription Factor Family AT5G45050 24.878 7.50e-08 55.1