Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00341 ATGCCAGTCCTTGAAACACTCGGCGGTGCTCTTTTTGGTGCTGTTCTTCAGGTGCTATTTGACAAGCTGGATTCTCATCAAGTTCTGGACTTCTTTCGTGGGAGAAATCTCAACGACAAGCTACTGAAAAAGTTGAAGAGGAAGCTGATGGACGTCAATTCTGTGATTGATGATGCAGAACAAAAGCAGTTCAGTAATTCATTAGTCAAAGAATGGCTTGATGAGGTTAGAGACGTCTTGTATGATGCAGAAGATCTGCTGGAGCAAATACACTATGAGTTCTTCAAAAATGAGTCGGAAGCTGAGTTGCACACCAGTGCTAGCAAGGTACGCAACTTTGAATCCAAGATGATAGAAGTCCTAGATGATCTAGAATCTCTCTTAAGTCAAAAGGTTGTTCAAGATTTTAAAATTTCTACTGGTGTTAGATCTGGGTTTGGTAATAAAGTGTCGGAGAAAAAAGTTGAATCTTCATCCTTGATGGCTAAAGATGCTGTTATTTATGGCAGAGACAAGGACAAAGAAATGATCTTTAGTTGGCTGACATCTGACACTAATGATAATAAGCTGTCAATACTTTCTATTGTGGGTATGGGTGGGATGGGTAAGACCACACTTGCTCAACATGTATACAATGATTCAAAGACAGAGGAAGCTAAATTTGATGAAAAAGCTTGGGTTTACGTTTCTGATGCATTTGATGCTTTGAGAGTATCCAAAGCAATTATTGGAGCTTTCACTAATTCAAGAGATGACAGTGGAAACCTAGAAATGGTTCATGGAAAATTGAAAAAAAAGTTGTCCGGAAGGAAGTTTCTTCTGGTTCTGGATGATGTTTGGAACGAAGACCGAAACCAATGGAAAGCATTAGAAACTCCTCTTACGTTTGGAGCTAAAGAAAGTAAAATTCTAGTCACAACACGCAGTCACAAAGTTGCTTCTATCATGCAGTCAACCTGCATACACCAACTAAAGCAATTAGATGAAGATCGCAGCTGGCAAATTTTTGCTAAACATGCATTCCAAGATGAAAACTCTAAGTTGAATTCTGAGCTGAAGGAGATTGGCATGAAGATAGTTGAAAAGTGCCAAGGATTGCCTCTGGCCCTTGAAACAATAGGATGTCTTTTACAGTCAAAGTCATCTGTTTCAGAGTGGGAAGGTGCATTGACAAGCGAGATATGGGACTTACCAATAGAAGATAGTAAAATCGTCCCTACTTTGTTGTTGAGCTATTACCATCTTCCTTCACATCTCAAGAGATGTTTCGCTTATTGTGCATTATTCCCCAAAGACCATAGGTTTGACAAGGAGAGCTTAATTTTCTTATGGATGGCTCAAAATTTTCTAGATTGCTCTGAACAAAGCAAATCTCCAGAAGAAGTAGGTGAAAACTACTTCAATGATCTAGTATCAAGGTCATTCTTTAAGCAAATAATTTGGTACAACAAAACATATTTTGTCATGCACGACCTTCTCAATGATTTAGCAAAATATGTTTCAGGTGAAATCTGCTACAGGTTAGGTGTTGATGGTGAAAAAAGAGTATCAAGGAAAACCCGTCACTTATCATATGTAAGTGGTCCTATTCAATATTATACGAGTTTATGTGATGCTAAAGGGTTACGAACTTTTATAACCTTTCGGTGGCGTGAGATGTCAATAGAAGAGTTAATCTCCAACTGTAAGTTCTTACGGGTCTTATCATGGCGTTGGTGTATTAAAGTGCCTGACAGTATAGGCGATCTTATACATCTCCGTTCGTTAGACCTTTCAGGTACCGACATAGAGAGACTTCCTGACTCAACCTGTTCACTCTATAACTTGCAAGAATTGAAGCTAAACAATTGTGTCAATTTGAAGGAGCTGCCCTTGACTTTGCATGAGCTCACCAATTTGCGCCGCCTTGAACTTAAGGGAACTACTCTAACAAAGGCTCCACTCCGTTTAGGAAAATTAAAGAATCTTCACGTGTGGATAGACAAGTTTGAGGTTGGCAAAAGTCGTGAGTTCAGTATTCAACAGTTAGGAGAACTTGATCTTCATGGAGAGCTGTCAATTAAAAATCTTGAAAGTATCACAAACCCCTATGAGACGATTTTGAAGAATAAAGCACATATTGTGCGGCTGAGTTTACAATGGAATTTGAAGCGGAACAATGCTGATTCAATGAAACAAAGAGAAGTACTTGAGAATTTGCAACCTTCTAGACATTTGAAGCAGTTGGTAATCTATTGCTATGGTGGTACAAAATTTCCCCGTTGGCTATCTGATAATTCTCTAACAAATGTTGTGTCCTTAACCTTGAAGAACTGTAAATATTGTCTATTTTTGCCTTCTCTTGGACTTTTGACATTTCTCAAGCACTTGACAATAGACGGACTTGATCAAATAGTGAGGATAGATGCTGAATTTTACGGGAATAGCTCTTCTGCATTTGCATGCTTAGAAACATTGAGGTTTACTGATATGAAAGAATGGGAAGAATGGCAATGCATGACCGGTGCTTTTCCAAGTCTTCAAAGTCTTTTTCTGACAAATTGTCCCAAGCTGAAAGAATTGCCAGACAACCTTTGTCATTTAAAGAAACTAACTGTTAAGAACTGCGGCCAATTTGGGGCTCCGATTCCTAGGGACGTAGAGAATCATTGTATGAATATGAGGCCATCTTCATTTGATATGAGTAGGCCGCCCCAAATATCTGATATCATTAACCATTCGTACAATTCCCTTGTAGAATTGTATATCAATGGTTGTGACTCTCTTACTACCTTTCCTTTAGATTTGTTCCCAAAACTCCGCAAGCTTAGTTTACTCGAGTGTTGTAACCTACAGATGATATCGCAGGGGCACCCTCACAATCATTTGGAGAGATTGAGCATTGAAAAATGCTCTGAATTTGAATCATTTCCCAATGAAGGATTGTTGGCAAGTCAGCTAAGGACATTTTTTATTGAAGGATTGGAGAAATTGAAGTCGATGCCTAAATGCATGTCTGCCCTTCTTCCATCTCTTAATGATCTGTACATACGCAACTGTCCAGTGGTGGAGTTGTCCGAGGGATGTTTGCCATCAAATGTAAAAACAATGCGTCTCCGGTATTGCTCCAAACTTGTGGCCTCCCTAAAGGGCGCTTGGGGAACCAATCCTTCCTTAAAAGTCTTGAATATTGGCAATGTGGATTTGGAGTGTTTTCCGGGTGAAGGTTTGCTCCCATTCTCTCTTCCTGAGCTATTCATAAGAGATTGTCCAAATCTTAAGAAACTAGACTACAGGGGTCTTTGTCATCTCTCTTCTCTTAAGAAGTTAACTCTCGATAATTGTCCAATACTGCAATGCTTGCCAGAGGAGGGTCTGCCCAAATCCATCTCAAAACTCATAATTGAAGACTGTCCTTTGCTCAAACAGCGCTGCAAGAAACAAGAAGGTGAAGACTGGGAAAAGATTGCTCACATTAAATCCATAATTGTTGATAACAAAGAAGTAAACATATAA 3495 0.3923 MPVLETLGGALFGAVLQVLFDKLDSHQVLDFFRGRNLNDKLLKKLKRKLMDVNSVIDDAEQKQFSNSLVKEWLDEVRDVLYDAEDLLEQIHYEFFKNESEAELHTSASKVRNFESKMIEVLDDLESLLSQKVVQDFKISTGVRSGFGNKVSEKKVESSSLMAKDAVIYGRDKDKEMIFSWLTSDTNDNKLSILSIVGMGGMGKTTLAQHVYNDSKTEEAKFDEKAWVYVSDAFDALRVSKAIIGAFTNSRDDSGNLEMVHGKLKKKLSGRKFLLVLDDVWNEDRNQWKALETPLTFGAKESKILVTTRSHKVASIMQSTCIHQLKQLDEDRSWQIFAKHAFQDENSKLNSELKEIGMKIVEKCQGLPLALETIGCLLQSKSSVSEWEGALTSEIWDLPIEDSKIVPTLLLSYYHLPSHLKRCFAYCALFPKDHRFDKESLIFLWMAQNFLDCSEQSKSPEEVGENYFNDLVSRSFFKQIIWYNKTYFVMHDLLNDLAKYVSGEICYRLGVDGEKRVSRKTRHLSYVSGPIQYYTSLCDAKGLRTFITFRWREMSIEELISNCKFLRVLSWRWCIKVPDSIGDLIHLRSLDLSGTDIERLPDSTCSLYNLQELKLNNCVNLKELPLTLHELTNLRRLELKGTTLTKAPLRLGKLKNLHVWIDKFEVGKSREFSIQQLGELDLHGELSIKNLESITNPYETILKNKAHIVRLSLQWNLKRNNADSMKQREVLENLQPSRHLKQLVIYCYGGTKFPRWLSDNSLTNVVSLTLKNCKYCLFLPSLGLLTFLKHLTIDGLDQIVRIDAEFYGNSSSAFACLETLRFTDMKEWEEWQCMTGAFPSLQSLFLTNCPKLKELPDNLCHLKKLTVKNCGQFGAPIPRDVENHCMNMRPSSFDMSRPPQISDIINHSYNSLVELYINGCDSLTTFPLDLFPKLRKLSLLECCNLQMISQGHPHNHLERLSIEKCSEFESFPNEGLLASQLRTFFIEGLEKLKSMPKCMSALLPSLNDLYIRNCPVVELSEGCLPSNVKTMRLRYCSKLVASLKGAWGTNPSLKVLNIGNVDLECFPGEGLLPFSLPELFIRDCPNLKKLDYRGLCHLSSLKKLTLDNCPILQCLPEEGLPKSISKLIIEDCPLLKQRCKKQEGEDWEKIAHIKSIIVDNKEVNI 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00341 1164 FunFam Probable disease resistance protein At1g63360 412 499 - -
Vimu5g00341 1164 Pfam NB-ARC domain 171 389 IPR002182 GO:0043531
Vimu5g00341 1164 SMART LRR_typ_2 1097 1121 IPR003591 -
Vimu5g00341 1164 SMART LRR_typ_2 583 606 IPR003591 -
Vimu5g00341 1164 SMART LRR_typ_2 837 861 IPR003591 -
Vimu5g00341 1164 SMART LRR_typ_2 630 653 IPR003591 -
Vimu5g00341 1164 SMART LRR_typ_2 1002 1025 IPR003591 -
Vimu5g00341 1164 Gene3D - 326 411 IPR042197 -
Vimu5g00341 1164 Gene3D Ribonuclease Inhibitor 515 660 IPR032675 -
Vimu5g00341 1164 Gene3D - 412 499 IPR036388 -
Vimu5g00341 1164 PANTHER DISEASE RESISTANCE PROTEIN RP 42 924 IPR044974 GO:0006952
Vimu5g00341 1164 Gene3D Ribonuclease Inhibitor 665 872 IPR032675 -
Vimu5g00341 1164 SUPERFAMILY L domain-like 908 1150 - -
Vimu5g00341 1164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 426 IPR027417 -
Vimu5g00341 1164 PRINTS Disease resistance protein signature 604 620 - -
Vimu5g00341 1164 PRINTS Disease resistance protein signature 363 377 - -
Vimu5g00341 1164 PRINTS Disease resistance protein signature 192 207 - -
Vimu5g00341 1164 PRINTS Disease resistance protein signature 266 280 - -
Vimu5g00341 1164 SUPERFAMILY L domain-like 488 869 - -
Vimu5g00341 1164 FunFam Probable disease resistance protein At1g61300 150 319 - -
Vimu5g00341 1164 Pfam Rx N-terminal domain 13 101 IPR041118 -
Vimu5g00341 1164 Gene3D - 16 129 - -
Vimu5g00341 1164 Coils Coil 42 62 - -
Vimu5g00341 1164 Gene3D Ribonuclease Inhibitor 876 1151 IPR032675 -
Vimu5g00341 1164 Gene3D - 146 322 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00341 Vimu-Chr5 3126220 3129714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00341 193 390 WRKY Transcription Factor Family AT5G45050 28.302 7.63e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00341 - - vun:114168932 1574.68