Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00337 ATGGAAGGAAAACAATTGATCGTGAGATCAATATATTCCTTTGTTTTTATGTTTTTGCTTGGCTTCAGACTACTTGTTACAGAGGCACAATCAAACTATGTGGGAGATGACTGCAGTTCCACCACCCCAAAATCTCTCAGCAGTGAATACAAAGACAACCTTAACAGTGTTCTGACATGGCTATCCTCAGATGCAGCCACAAGCAAAGGCTATAACCATAACAGCTTTGGCAACAGCACCTCTGGTGCAGATGCTGCTGTGTATGGCCTCTATGATTGCCGTGGTGATGTTTCTGGATACTTTTGTCAGTTCTGTGTTTCCACTGCTTCCAGAGAAGTTCTTCAGCGCTGCCCGAACAGGGTATCTGTTATTACATGGTATGATTTCTGCATCTTAAGGTACTCAAATGAGAACTTCTTTGGTAATGTTACAGTAGACCCAGCATGGAATCATACTGGATCAAAAAATGTCTCTAGTTCGGAAGAGATTCAAAAGGGTGAGGGTTTTATGAGAAGTTTGATCAGAAAAGCTACTGTGGAGACCAACCAGTTGTATTATATGGATGGCTTCAATTTGAGTTCCACTCAGAGAAGGTATGGCTTGGTTCAATGCAGTAGAGATCTCACAAGAGAAGGGTGCAGAGAGTGTTTGGAGACCATGTTAGCAAAAGTTCCCAAATGCTGTGAGCATAAGTTGGGGTGGCAAGTTTCCAGTGCAAGTTGTCTCATAAAGTATGATGACTATATTTTCTACCTTTTTCACAATCCAACATCTTCTGTTTCTGTGCCTGATACTCAAATAGCCAAACAAAGGGGTGGTAGTAAGGCAAAACTATTGATCATTGGCTTAAGCGTGCTGGGCGCAGTAGCTTTGCTATGTTTCAGTGTTTATTGCTTCTGGTTCAGAAAAAGAGCTAGAACTGGAAGAAGAACTGGTGGACGTATTCCTGAGACCATTCGTCTATCATCATATCACAATGTTCAAACTGAGGAAACACTGAATCCAGACATCTCTACAATCCCATTAATCACAATTCTACAAAGTACTGATAACTTTTCAGAAGCATCTAAGCTAGGGGAAGGTGGATTTGGCCCCGTTTACAAGGGAGTTCTACCAGATGGAAGACAAATTGCAGTCAAAAGACTCTCAGAATCTTCTGGTCAAGGGTCAGAAGAATTCAAGAATGAAGTAATGTTTATAGCTAAATTGCAACATCGCAACCTTGAAAAAGAGAAGATACTTGTATATGAGTATATGACGAACGCAAGTCTCGACTTTCACCTCTTTGATGAGAGAAAGAAAAGACAGTTGGATTGGAAACTAAGATTAAGCATCATAAATGGCATAGCAAAAGGACTTTTATACCTTCACGAGGATTCTAGACTCAAAGTTATTCACAGAGATCTCAAAGCTAGTAATGTTTTATTAGATGATGAAATGAATCCTAAAATATCAGACTTTGGATTGGCAAGATCATTTGAGAAAGGCCAGAACCAAGCAAATACAAGACGAGTAATGGGCACATAG 1527 0.4021 MEGKQLIVRSIYSFVFMFLLGFRLLVTEAQSNYVGDDCSSTTPKSLSSEYKDNLNSVLTWLSSDAATSKGYNHNSFGNSTSGADAAVYGLYDCRGDVSGYFCQFCVSTASREVLQRCPNRVSVITWYDFCILRYSNENFFGNVTVDPAWNHTGSKNVSSSEEIQKGEGFMRSLIRKATVETNQLYYMDGFNLSSTQRRYGLVQCSRDLTREGCRECLETMLAKVPKCCEHKLGWQVSSASCLIKYDDYIFYLFHNPTSSVSVPDTQIAKQRGGSKAKLLIIGLSVLGAVALLCFSVYCFWFRKRARTGRRTGGRIPETIRLSSYHNVQTEETLNPDISTIPLITILQSTDNFSEASKLGEGGFGPVYKGVLPDGRQIAVKRLSESSGQGSEEFKNEVMFIAKLQHRNLEKEKILVYEYMTNASLDFHLFDERKKRQLDWKLRLSIINGIAKGLLYLHEDSRLKVIHRDLKASNVLLDDEMNPKISDFGLARSFEKGQNQANTRRVMGT 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00337 508 ProSiteProfiles Protein kinase domain profile. 352 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00337 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Vimu5g00337 508 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 47 508 - -
Vimu5g00337 508 Gene3D Transferase(Phosphotransferase) domain 1 419 508 - -
Vimu5g00337 508 Gene3D Phosphorylase Kinase; domain 1 316 418 - -
Vimu5g00337 508 FunFam Cysteine-rich receptor-like protein kinase 10 147 250 - -
Vimu5g00337 508 SMART serkin_6 352 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00337 508 FunFam Cysteine-rich receptor-like protein kinase 28 34 138 - -
Vimu5g00337 508 Pfam Protein kinase domain 353 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00337 508 ProSiteProfiles Gnk2-homologous domain profile. 145 250 IPR002902 -
Vimu5g00337 508 Pfam Salt stress response/antifungal 38 136 IPR002902 -
Vimu5g00337 508 Pfam Salt stress response/antifungal 169 248 IPR002902 -
Vimu5g00337 508 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 419 508 - -
Vimu5g00337 508 ProSiteProfiles Gnk2-homologous domain profile. 32 139 IPR002902 -
Vimu5g00337 508 SUPERFAMILY Protein kinase-like (PK-like) 325 508 IPR011009 -
Vimu5g00337 508 Gene3D - 148 250 IPR038408 -
Vimu5g00337 508 Gene3D - 30 139 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00337 Vimu-Chr5 3100903 3103109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00337 15 508 Receptor kinase-like Gene Family AT4G05200 40.426 3.91e-119 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu5g00337 Pkinase 3.4e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00337 - - gmx:100796972 820.076