Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00336 ATGTCTCCATCAGTGAAATCAAAATCCAAGTCCCAGGAGAAAGCCTCTCCAAGGGCTGGTAAGGAACAACATAAGACTTCTCCAAAGACTTCTGTCTCTCTTACTCATGGAAGTGGTGTTCCTGCCAGTCCACAAAATCCTATCTTGGGAACATTTCAAACACCAGAAATATTATTGGTTGCTTCCTCTATTCGAGTTCATGACACCAGTCATTTCACAAAAGTAGAGGATGCAGATGAGCATTCCAGTAGTCCCCAAGGAGCCGTGTCAGAGAGTGATTCAGTTTCTATCAATGGCAGCTGCTCTGGTGAGTCAGAAGAGTCTAAAGAGAAGGTAGCAGTAACAAACTCTTCTGCACGGCCTGATAGTGTGCCTGGTTGTGATAGTGACAGGAGGGAGAAAATCCGGTTGAAGAATGAGAGGAAGCACCAGAGACAGAGAGAAAGGAGAGCTCAAGAGTTGCATGACCGTTGTCGTGGTTACCTATTGTCAAGAAAGCTAGAATCACTTGCACAGCAATTAGTGGCAATGGGGTTCTCTTCTGAACGAGCAACACTGGCCTTAATGTTAAACGATGGAAAATTAGAGCAATCAGTATCTTGGCTATTTGAAGCAAATGAAGAACAATCACAAACTAAGGATACTACCAGCCTTGTGAGTGAGGGTAATCTGAAAATTGACATAACTGATGAGCTTGCTCAGATATCTGCCTTGGAAGTCAAGTACAATTGTTCAAAGCAAGAGGTTGAAAGAGCAATTGTTGCTTATGAAGGTGATCTTCAAAAGGCAGAAAATACCTTAAAAACACAGAAGCAGGAGCAGCATGGTACCCAATCAAAGTCTGAAGATTCTGGTCAGAACAGTATGAGATCACAAGGATTTCCAGCAGAGTCGGTTTCCATGCAGCAGAGAGAGAGTGAAAGTGACTTCAACCATTACAGCAAGGATGGTGGTTCTGACTCTATGTTCCCTGATCTTGAAACTGGGAATGTACAGTCTCTGCAACCGAATCATACGAATTTCACCAGGGAGAGAAGATGGAGTGGTGTTCCAGGATCAAGCCCTTCTTCTGCCATGTTAGCCATGGCACCATCCTTGCAGGCAGTGTCTCCATTGATCAAAATGGAGGCTGGCATGCCTATTGGTGTTGCAAACGAAGGAAGAATGATTCAACAAGGACTAGGAAGGGAACCAGTAATGATGCAACATCCACAATTCACAAATGCCAAAAAAAACTCCATGGTTTCTTTAAATTCCTTTCCTTCAGGAGCTGCAGGGTGGTATGTAAATAGTATTCCAGGTGTTGAAAATGTGAGGTCAAATGGGAAGTTACTACAAACTCAAAGTGTAAGAAGTATCAGTCCAAATCATTTGGAGCAATTTTGCCAAGCTCCTTACAAAGAATATTCTCATTTCTTTGGACCAGTAGATTACTCATCTGCTGGGGTGGGTGGTTTCTGCAAGCCAATGGGTGGATCATCAACACCTCCACCTTCAATTCCTCCTCGGCATCACGGTTCATGGGGGATGAACGTGCCACCGTTGCCTGCACTCGCAGTGCCGACATCCCTTGGACTGTTTTCTGGTCATCATAATGCAGCCAGAACATTCAGCTCACATCCACACATGGATTGGAACACTGGGGGGTTGATGCCAGAGTTTGACTATACCAGCATAGATTGGAGTTTGAATGTGCAATCTTCTTCAGGTGGAGCTTCTTTAGGGATCTCTTCATTATTGAGAAACAGTTATGGAAATAGGAGAAGCAGTCCCTGCATGAGTGGATTGCAAAATGTTGGCATGAATAGGGAAAGTTCATCATCTGCTGGATTGAGAGAGTGGACCACTCCTTTTGCAGGGAAGGACTTATTCAGTGTTCCTAGGCAGTTTGTTACATCTCCTCCTATGTAG 1911 0.4417 MSPSVKSKSKSQEKASPRAGKEQHKTSPKTSVSLTHGSGVPASPQNPILGTFQTPEILLVASSIRVHDTSHFTKVEDADEHSSSPQGAVSESDSVSINGSCSGESEESKEKVAVTNSSARPDSVPGCDSDRREKIRLKNERKHQRQRERRAQELHDRCRGYLLSRKLESLAQQLVAMGFSSERATLALMLNDGKLEQSVSWLFEANEEQSQTKDTTSLVSEGNLKIDITDELAQISALEVKYNCSKQEVERAIVAYEGDLQKAENTLKTQKQEQHGTQSKSEDSGQNSMRSQGFPAESVSMQQRESESDFNHYSKDGGSDSMFPDLETGNVQSLQPNHTNFTRERRWSGVPGSSPSSAMLAMAPSLQAVSPLIKMEAGMPIGVANEGRMIQQGLGREPVMMQHPQFTNAKKNSMVSLNSFPSGAAGWYVNSIPGVENVRSNGKLLQTQSVRSISPNHLEQFCQAPYKEYSHFFGPVDYSSAGVGGFCKPMGGSSTPPPSIPPRHHGSWGMNVPPLPALAVPTSLGLFSGHHNAARTFSSHPHMDWNTGGLMPEFDYTSIDWSLNVQSSSGGASLGISSLLRNSYGNRRSSPCMSGLQNVGMNRESSSSAGLREWTTPFAGKDLFSVPRQFVTSPPM 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00336 636 SUPERFAMILY UBA-like 168 208 IPR009060 GO:0005515
Vimu5g00336 636 MobiDBLite consensus disorder prediction 1 49 - -
Vimu5g00336 636 MobiDBLite consensus disorder prediction 266 339 - -
Vimu5g00336 636 MobiDBLite consensus disorder prediction 83 103 - -
Vimu5g00336 636 Gene3D - 127 218 - -
Vimu5g00336 636 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 165 205 IPR015940 -
Vimu5g00336 636 Coils Coil 246 280 - -
Vimu5g00336 636 PANTHER UBIQUITIN-ASSOCIATED/TRANSLATION ELONGATION FACTOR EF1B PROTEIN 1 634 - -
Vimu5g00336 636 SMART uba_6 167 204 IPR015940 -
Vimu5g00336 636 MobiDBLite consensus disorder prediction 325 339 - -
Vimu5g00336 636 MobiDBLite consensus disorder prediction 26 49 - -
Vimu5g00336 636 MobiDBLite consensus disorder prediction 270 307 - -
Vimu5g00336 636 MobiDBLite consensus disorder prediction 11 25 - -
Vimu5g00336 636 MobiDBLite consensus disorder prediction 74 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00336 Vimu-Chr5 3097112 3099022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00336 7 635 EF-hand Containing Proteins AT5G12120 34.183 1.57e-84 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00336 - - vun:114170561 1159.44