Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00323 ATGGCCTCTTCAAATTCACCATGTGCAGCATGCAAGTTCTTGCGTCGCAAATGCCAACCCGAGTGTGCTTTTGCACCCTATTTTCCTCCCGACCAACCCCAGAAGTTTGCAAATGTTCATAGAATTTTTGGGGCCAGCAATGTCACCAAGCTTCTCAACGATTTGCACCCTCATCAACGTGAAGATGCTGTGAATTCCCTTGCTTATGAAGCTGAGATGAGACTCCGTGACCCTGTGTATGGCTGTGTTGGAGTCATATCACTCTTACAGCACCAACTTCGCCAGCTTCAAATGGATCTCTACTGCGCCAAATCTGAGCTCTCCAGGTACCAAAACCTAAGCAGCATCACCACCAATCACACCCTCATGACCTCTGAATCCGCCGCAGCCTTCCACCACCACCACCACCACCAAAACAACAACACTGCTAACAGCTTTGGCCGAGACCATCACTACCACTTTCACCACCATCAGTTTTTCCCCAGAGATCAACACCAACAAGTAGCAAGAAGCTTTGATGGAGGCAACAACTACGATGCAAGCCTCTTGGCCATGAACATATCTGCCAGCTTAGGGCAACTCAACCAGCTTCAGCATCAGAGTGCTGCTGGCGGTGGCGATGACCGCCACACTGCCAACCGCACCTAG 648 0.5046 MASSNSPCAACKFLRRKCQPECAFAPYFPPDQPQKFANVHRIFGASNVTKLLNDLHPHQREDAVNSLAYEAEMRLRDPVYGCVGVISLLQHQLRQLQMDLYCAKSELSRYQNLSSITTNHTLMTSESAAAFHHHHHHQNNNTANSFGRDHHYHFHHHQFFPRDQHQQVARSFDGGNNYDASLLAMNISASLGQLNQLQHQSAAGGGDDRHTANRT 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00323 215 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 140 - -
Vimu5g00323 215 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Vimu5g00323 215 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00323 Vimu-Chr5 2972118 2972765 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00323 2 213 AS2 family AT1G65620 61.321 7.56e-79 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu5g00323 LOB 3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00323 - - gmx:100806890 363.614