Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00307 ATGTATGTTTTAGTGCTATATGTTGTTCAAAGCTTAGACTTTTTTATGAGAAGTTTGATGGAAACTAATGAAAGATGGTTGCTTTCGAAGGGACAGAGATTAGGAGAAATCTGTGTGGATTTTGGGGAGTCATTAAGTGATTGTATGCTTTGGTTTCAATTTGCTGGCCTTAGATTTTATTCCAAATGCGTTTTACTTGCAGTTGGCTTTGTGGCACGCCGAACCAAATTTGAGTTGAAAGGGGATGATATGGTTTACGCGCGGCTAAACAAATACGATGAAGAGATAACCCCTTCACCCGTAGATGAAGATTTGCCTGGGATGGGACAATACTATTGCCCTCACTACGAGAATATGGATACTGAAGTATTCGTCTCCAAGCTCGTTTTTTTGTTACTTTTTTGGTTGTTGGTTGGTTTCATGATTAGATTGAAGTTTTTGAAGACCAGGAAGAAAGTTAGTGCAGGAATCATATCACCATATAAGGCTCAAGTTTATGAAATCCAACAGAAAGTTAAGCAGTACGTCTCGGTTTCTGATTCTCACTTCTCTGTTAGTATTATATCTGTTGATGGTTTTCAAGGCAGTGAAGAGGATATTATAATATTATGTACTGTAAGATCTAATGGAAGTGGAAAAGTAGGTTTTCTTTCCAATAGGCAAAGAGCAAATGTCGCTCTTACCCGAGCTAAGTATGTTTCTTGCAGGGTGGGGTATTGA 720 0.3819 MYVLVLYVVQSLDFFMRSLMETNERWLLSKGQRLGEICVDFGESLSDCMLWFQFAGLRFYSKCVLLAVGFVARRTKFELKGDDMVYARLNKYDEEITPSPVDEDLPGMGQYYCPHYENMDTEVFVSKLVFLLLFWLLVGFMIRLKFLKTRKKVSAGIISPYKAQVYEIQQKVKQYVSVSDSHFSVSIISVDGFQGSEEDIIILCTVRSNGSGKVGFLSNRQRANVALTRAKYVSCRVGY 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00307 239 CDD SF1_C_Upf1 156 232 IPR047187 -
Vimu5g00307 239 PANTHER DNA2/NAM7 HELICASE FAMILY 121 232 IPR045055 -
Vimu5g00307 239 Gene3D - 124 238 IPR027417 -
Vimu5g00307 239 Pfam AAA domain 151 237 IPR041679 -
Vimu5g00307 239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 234 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00307 Vimu-Chr5 2889691 2891958 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00307 71 115 C2H2 Transcription Factor Family AT2G36930 64.444 1.60e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00307 - - vra:106779684 155.221