Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00305 ATGGCAGCAGAAATGGTTACCGGTGTTCTTGTTTCCACTTTCCTCGAGAGCACTATTGACACTTTGGCTTCTCGTCTTATCGACACATTTCGTCGGAGAAATCATAAGCAGAAACTTAGCAACTTGAAGATGAAGCTGCTAGCCATTGATGTTGTGGCTTTTGATGCAGAACAAAAGCAGTTCACCGATCCACGTGTCCGACATTGGCTTCTTAGGGCCAAAGATGTTGTTCTTGATGCAGAGGATCTCTTGGATGAGATAAATTATGAACTCTCCAAAACCCAACTGGAAGCTAAGTCTCAGAGTGCTACTACCAAGGTGTGGAATTCCTCCCAATCTTCTTTTGGATTTTTCTTTGAAAGTGAAATTGAATCCATGATGGAACAAGTCATTGATGACTTAGAAGATCTTGCAACCCGAAGCGATTTTCTAGGTTTGAAAAAGGGTAGTGGTGCTGGGGTTGGATCAGGATTGGGTAGTAAATTAACACATACATCATTGCCAAATGAAAGTGTTATCTATGGCAGAGATGATGACAAAGATTTTGTCTTTAACTGGCTCATATCTGACACTCTCAACAAGTTATCTATACTTTCTATTGTGGGCATGGGTGGGTTGGGTAAGACTTCACTTGCCCAACATGTTTTCAATGACCCAAGGATTGAAGGTAAATTTGACATTAAAGCTTGGGTCAGTGTTCCACAGGAATTTGATGTTCTCAATGTATCAAAAGCAATTCTTAATACAATTACTGGTTCAACAGATGATAGTGTACAGCAGGAACTGATTCAGAGAAGACTGAAAGAAAAACTTATGGGGAAGAAATTTCTTCTCGTTTTGGATGATGTTTGGAACGAAAGACCATCTAAATGGGAAGATGTGCAGAAACCCCTAGTTTTTGGAGGCCAAGGGAGTAGAATTCTTGTCACTACACGGAGTGAGAAGGTTGTTGCTGCCATGCGATCAGAAAAGCACCTCCTACAGGTATTAAAAGAGGATTATTGTTGGGACTTGTTCGCAAAGCATGCATTCGAAAATCCTAATTCGCAACCAGACCCAGACTTCATAGAGATGGGTAAGAAGATAGTGCAAAAATGTAATGGGCTTCCTTTAGCCTTAAAAACCATGGGAAGTCTATTACACAATAAATCATCCCTTTGGGAATGGGAAAGTATTATGGAAAGTGAGATATGGGATTTTTCAGAAAATGAAAGTGATATACTCCCTGCTTTAAAACTGAGCTATTTCCACCTTCCTTCTCATTTGAAGAAATGCTTTGCTTTTTGTGCCTTATTTCCCAGAGGTTATCGGTTTGACAAGGAATGTTTAATTCAATTGTGGATGGCTCAAAATTTTCTAGAAAACCCTCTACAGAAAAAGAGTCCTAAAGAAGTTGGTGAAGACTATTTCAATGATCTATTATCTTGGTCCTTCTTTCAACAGTCAAGCAACGAAGAGGAAAAGCATTTTATCATGCATGACCTTTTAAATGATTTGGCAAAATTCGTTTGTGAGGACATATGTATTAAGTTAGGAGTTGATGAACCAAAAGGTATACCCAAAACAACCCGTCATTGTTCATTTTCATCCTCTAAATTAAGTTTTGATGGGTTAGGGACTTCGATTGACACTAAAAAGTTGCATACATTTACGCCAAGAGATTGGGATTGGAATTGCAAGATGTCGATAGATGACTTGTTCTCCAAATTTAAGTTCATTCGTGTCTTATCTTTGTCTCATTATCGTAAACTTACGGAGGTGCCTAACTCTGTAGGAAATCTTAAGCATCTCCGTTCATTAGATCTTTCCTATACTAATATAGAAAAACTACCTGATTCAATAAGTTTACTCTACAAGTTGCAAATACTGAAGCTGAACTATTGTCATAGATTAAAGGAACTTCCCTCATGTTTACATCAACTCGACAATTTGCGTTGTGTTGAATTAGTAGATATTGGAGTGAAAAATGTGGTAGCATATTTGGGAAAGCTGAAGAATGCTGAAGTATGGATGAGTTCATTTCATGTTGAGAAAAGTAAGGAGATCAATATTCAGCAATTAGGAGAACTCAATCTTCATGGAAGTTTAGCAATTTATGATTTGCAGAATATTGAGAATCCCTCTTATACAATAGAAGTGAATTTGAAGAACAAACCACACCTCGTAGGCCTACGGTTAAAATGGAATTTCATTGACAGCTCCTCTGTTGATTCAGAAAAAGTAGAGGATGTAATTGAAAATCTACAACCTTCGAAATACTTGAAGAAGTTGTCAATAAGTAACTATATTGGTAAACAATTTCCAAATTGGTTACTCCATAATTCATTACCGAATCTAGTGTCCTTAGTATTGGAGAGATGTGAATCTTGCCAACGTTTACCTCCGCTTGGACTTTTGCCATTTCTCAAGGACTTGAACATTGCAAGACTTGATGGGATAGTGAGTATTGATGCTGATTTTCATGGGAACAACTCTTGTTCATTTAAATCCCTTCAAACATTGTATTTCTCCGATATGAGGCAATGGGAAAAGTGGGACTGCGAAGCTGTGACAGGTGCTTTTCCTTGTCTACAATATTTTTCCATAGAAAATTGTCCCAAGCTGAAAGAACACCTGCCAAAGTTTGTTGCTTTAAAAACTCTACGAGTGATTCACTGCGAACAACTTGAAGCTTTGATTGTCAGTGCGCTAGAAGAGTGTGGAAAGCTGCAGTTGGAGTGGTCTACAATGAAAAAGCTCACAATGGATGAGCACGGCATGGCAGCATCATTGGTGGCAATGGCAGCATCTCTTGAAAAGTTGTCCATTTGTTCATCAATGGAGTCAATAAGTGATGATTGTGTCTCTCTAAGGATCTTTCCACTGGATTTCTTCCCAACACTCAGGACCCTTGAACTCATTGGATTTCCTAATCTACGGATGATTTCACAGGATCACATTCACAATCATCTCCAGTATCTGACAATGAAAGACTGCCCTAAATTTGAATCATTGCCTGCAAACACGCATATACTGCTTCCATCTCTCACGATTCTATGGATAGAAGAGTGTCCAAGACTTGAGTCGATGTCGGACGGAGGTTTGCCATCAAATCTAAGGTACATCACACTCTATAATTGCTTTAGACTTGTTGGCTTACTGAAGGAAGCTTTGAGAGACAGTTCTTCATTGGAAACGTTGAGGATATCAACACCAGATGCAGAATGTTTTCCTGATGAAGGTTTGCTTCCACTCTCTCTTACTTCTCTAACCATCTATGGTTGTCCAAATCTAGAAAGACTGAACTGCAAGAGTCTCTTAGAACTCTCATCTCTTGAAAGACTGACTCTTTCTAAATGTGAAAAGCTCCAATGCTTACCTGAGGAGGGTCTTCCCAAATCAATTACACATCTTTATATAAACGAGTGTCCTTTACTGGAAGAGCGTTGCCATAAAGGAGGCGAAGACAGGGAAAAGATTGCCCACATTCGAAACGTATTTATATGGGAGTGA 3492 0.3886 MAAEMVTGVLVSTFLESTIDTLASRLIDTFRRRNHKQKLSNLKMKLLAIDVVAFDAEQKQFTDPRVRHWLLRAKDVVLDAEDLLDEINYELSKTQLEAKSQSATTKVWNSSQSSFGFFFESEIESMMEQVIDDLEDLATRSDFLGLKKGSGAGVGSGLGSKLTHTSLPNESVIYGRDDDKDFVFNWLISDTLNKLSILSIVGMGGLGKTSLAQHVFNDPRIEGKFDIKAWVSVPQEFDVLNVSKAILNTITGSTDDSVQQELIQRRLKEKLMGKKFLLVLDDVWNERPSKWEDVQKPLVFGGQGSRILVTTRSEKVVAAMRSEKHLLQVLKEDYCWDLFAKHAFENPNSQPDPDFIEMGKKIVQKCNGLPLALKTMGSLLHNKSSLWEWESIMESEIWDFSENESDILPALKLSYFHLPSHLKKCFAFCALFPRGYRFDKECLIQLWMAQNFLENPLQKKSPKEVGEDYFNDLLSWSFFQQSSNEEEKHFIMHDLLNDLAKFVCEDICIKLGVDEPKGIPKTTRHCSFSSSKLSFDGLGTSIDTKKLHTFTPRDWDWNCKMSIDDLFSKFKFIRVLSLSHYRKLTEVPNSVGNLKHLRSLDLSYTNIEKLPDSISLLYKLQILKLNYCHRLKELPSCLHQLDNLRCVELVDIGVKNVVAYLGKLKNAEVWMSSFHVEKSKEINIQQLGELNLHGSLAIYDLQNIENPSYTIEVNLKNKPHLVGLRLKWNFIDSSSVDSEKVEDVIENLQPSKYLKKLSISNYIGKQFPNWLLHNSLPNLVSLVLERCESCQRLPPLGLLPFLKDLNIARLDGIVSIDADFHGNNSCSFKSLQTLYFSDMRQWEKWDCEAVTGAFPCLQYFSIENCPKLKEHLPKFVALKTLRVIHCEQLEALIVSALEECGKLQLEWSTMKKLTMDEHGMAASLVAMAASLEKLSICSSMESISDDCVSLRIFPLDFFPTLRTLELIGFPNLRMISQDHIHNHLQYLTMKDCPKFESLPANTHILLPSLTILWIEECPRLESMSDGGLPSNLRYITLYNCFRLVGLLKEALRDSSSLETLRISTPDAECFPDEGLLPLSLTSLTIYGCPNLERLNCKSLLELSSLERLTLSKCEKLQCLPEEGLPKSITHLYINECPLLEERCHKGGEDREKIAHIRNVFIWE 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00305 1163 Gene3D - 414 502 IPR036388 -
Vimu5g00305 1163 Gene3D - 157 329 IPR027417 -
Vimu5g00305 1163 Gene3D Ribonuclease Inhibitor 1026 1145 IPR032675 -
Vimu5g00305 1163 Gene3D Ribonuclease Inhibitor 875 1025 IPR032675 -
Vimu5g00305 1163 Gene3D Ribonuclease Inhibitor 679 874 IPR032675 -
Vimu5g00305 1163 PANTHER DISEASE RESISTANCE PROTEIN RP 42 865 IPR044974 GO:0006952
Vimu5g00305 1163 ProSiteProfiles Leucine-rich repeat profile. 596 617 IPR001611 GO:0005515
Vimu5g00305 1163 Pfam NB-ARC domain 177 394 IPR002182 GO:0043531
Vimu5g00305 1163 Gene3D - 15 137 - -
Vimu5g00305 1163 PRINTS Disease resistance protein signature 592 608 - -
Vimu5g00305 1163 PRINTS Disease resistance protein signature 197 212 - -
Vimu5g00305 1163 PRINTS Disease resistance protein signature 270 284 - -
Vimu5g00305 1163 PRINTS Disease resistance protein signature 366 380 - -
Vimu5g00305 1163 Gene3D - 330 413 IPR042197 -
Vimu5g00305 1163 FunFam Probable disease resistance protein At1g61300 160 325 - -
Vimu5g00305 1163 SUPERFAMILY L domain-like 936 1139 - -
Vimu5g00305 1163 Gene3D Ribonuclease Inhibitor 521 663 IPR032675 -
Vimu5g00305 1163 SUPERFAMILY L domain-like 492 899 - -
Vimu5g00305 1163 Coils Coil 886 906 - -
Vimu5g00305 1163 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 429 IPR027417 -
Vimu5g00305 1163 FunFam Probable disease resistance protein At5g66910 329 414 - -
Vimu5g00305 1163 Pfam Rx N-terminal domain 14 101 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00305 Vimu-Chr5 2872719 2876210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00305 198 439 WRKY Transcription Factor Family AT5G45050 28.514 8.30e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00305 - - var:108338879 1749.18