Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00294 ATGCAAGAAGACGGAGAAGAAGAGATTTTAGCCCCTCAACTCCTTTATGCCTATGAAACCAGCATAGATTCTCAGGCTCATGGAACACACACTACCTCAACTGCAGCAGGTGATATGGTGAAAAATGCCAACTTTCTTGGCCAGGCTAGAGGTACAGCAACTGGAATGAGGTATACTTCTAGAATTGAGCTCATCGACCTTGAGGTTTTTGAGGAGCTCTCCGATAGCGATTTTGAGGAGCTTGTGAAAAATCGTACATCTCCTACCGCAGCGAGTTCTTGGAGCGGTGGAGTAGAAGCAGGTAGCGCAGGGGAGGCTGAGCAGTCCAAGTTCGTGGTGATGAAGGCCAAGCAGGAGCGGCGGACCGCAATTATTCGTGCTGAGGGAGAGAGCGATGTGGCGAAGCTAATCTTCGACGCTACTGCCTCGGCTGGAATGGGGCTGATTGAACTCAGGAGGATTGAAGCGTCCAGGGAAATAGCCTCCACGCTTGCAAAGTCGCCAAATGTTTCGTAG 516 0.5058 MQEDGEEEILAPQLLYAYETSIDSQAHGTHTTSTAAGDMVKNANFLGQARGTATGMRYTSRIELIDLEVFEELSDSDFEELVKNRTSPTAASSWSGGVEAGSAGEAEQSKFVVMKAKQERRTAIIRAEGESDVAKLIFDATASAGMGLIELRRIEASREIASTLAKSPNVS 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00294 171 Gene3D Peptidase S8/S53 domain 18 62 IPR036852 GO:0004252|GO:0006508
Vimu5g00294 171 PRINTS Prohibitin signature 118 134 IPR000163 GO:0016020
Vimu5g00294 171 PRINTS Prohibitin signature 95 118 IPR000163 GO:0016020
Vimu5g00294 171 PANTHER PROHIBITIN 103 170 IPR000163 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00294 Vimu-Chr5 2728807 2732703 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00294 18 62 Subtilisin-like Serine Gene Family AT1G01900 62.222 3.95e-14 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00294 K17080 - gmx:100779966 114.005