Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00280 ATGGTTACCGGTGTTCTTCTTCCTGCTTTCCTCGGGAGGACTATCGACACTTTGGCTTCCCGTCTTGTCCACATATTTTCTCAAAGAAAGCACAAGAAGCAACTCAACAACTTGAAGATGAAACTCCTTGCCATTGATGTTGTGGCTTTTGATGCAGAACAAAAGCAGTTCACAGATCAACGTGTCAGAGATTGGCTTCTCAGGGCCAAAGATGCTGTGTTTGATGCAGAGGATCTATTAGATGAAATAGATTATGAACTCTCTAAAAGCCAAGTGGAAGCTGAGTCTCAGAGTGATGGTAAGAAGGTGTGGAATTCCCTCAACTCTTCTTTTCTCAGTTTTGAAAATGAAATTGAATCCATGATGGAAAAAGTTGAGGACTTGTTCTTGGACCTAGAAGATCTTGCGAACGAAAGCAATATTCTCGGTTTGGAAAAGGGTGGTGGTGTTGGGGTTGGATCAGGATCGGGTAGTAAATTAACATATACATCTTTGCCAAATGAAAGTTTTATCTATGGCAGAGATGATGACAAAAAATTTGTTTTGAACTGGCTCACATCGGACACTCACAACAACCTATCTATACTTTCTATTGTGGGCATGGGTGGGTTGGGTAAGACCTGTCTTGCTCAACATGTATTCGATGACCCAAGGCTTGAAGGTAAATTTGATATGAAAGCTTGGGTTAGTCTTCCACAGGAATTTGATGTTCTCGAAGTATCAAAAGCAATTCTTGGTACAATTACTGGTTCAACTGATCATAGTATACAAGAAGTGATTCAGAAAAGATTGAAAGAAGAACTTATGAGGAAGAAATTTCTTCTCATTTTGGATAACGTTTGGAATGAAAGCCCATCTAAATGGGAAGATGTGCAAAAGCCCCTTGTTTTCGGAGGCCAAGGCAGTAGGATTCTTGTCACTACTCGGAGTCAGAAGGTTGCTGCTGCCATGCGATCAGAAAAGCACTTCCTGCAGGTATTAAAAGAAGATGATTGTTGGGACTTGTTCGCAAAGCATGCATTCCAAAATGGTAATCCGCAACCAGACCCAGACTTCATAGAGATTGGTAAGAAGATAGTTGAAAAATGCGATGGACTTCCTTTAGCCTTAAAAACTATGGGAAGCCTGTTACACAACAAATCATCTCTTGGGGAATGGGAAAGTATTATGAAAAGTGAGATATGGCACTTTTCAGAAAATGAAAGTGATATATTCCCTGCTTTAAAATTGAGCTATTTCCACCTTCCTTCTCATCTGAAAAAATGCTTTGCTTTTTGTGCCTTATTTCCCAAAGGTTATCGGTTTGACAAGGAGTATTTAATTCAACAGTGGATCGCTCAATATTTTCTAGAAAACCCTCTACAGAAAAAGAGTCCTAAAGAAGTTGGTGAAGAATATTTCAGTGATCTATTATCACGGTTCTTCTTTCAACCGTCAACCAACGAAGAGGAAAAGCATTTTATCATGCATGACCTTCTAAATGATTTGGCAAAATATGTTTCGGAGGACATATGCATCAGGTTAGGAGTTGATGAACCAAAAGGTATACCCAAAACAACCCGTCATTATTCATTTTCATTCTCTGAATTATGTTTTAATGGGTTTGAGAGTTCGATTGATACTCAAAAGTTGCATACATTTACGCCAATAGGTAAGGGTTGGGATTGGGATTGCAAGATGACGATAGATGACTTGTTCTCCAGATTTAAGTTGATACGTGTCTTATCTTTGAATAATTGTCGTAGCCTTACAGAGATGCCGAAATCTATTGGAAATCTTAAGCATCTTCGTTCATTTGATCTCTCTTATACTGAAATAGAAAAACTACCCGACTCAATAAGTTTACTCTACAAGTTGCAAATACTGAAGCTGAACTATTGTCGAAAATTAAAGGAGTTTCCTTCATGTTTACATGAACTAGACAATTTGCGTTGTCTTGAATTAGAAGGTATTAGAGTGAAAAATGTGGTAGCACATTTGGGAAAGCTGAAGAAAAATCCTCAAGTATCAATAAGTTCATTTCATGTGGAGAAAAGTAAGGAAATCAATATTCGGCAATTGGGAGAACTCAATCTTCATGGAAGTCTAACAATTGATGATATGCAGAATATTGAGAATCCCTCTGATACAATAGAAGTAGATTTGAAGAACAAACCACACCTTGTGGGGCTAGAGTTAAAATGGAATTTCATTGGCAGCTCCTCTGTTGATTCAGAAAAAGTTGAGGATGTAATTGAAAATCTACGACCTTCAAAATACTTGAAAAAGTTGTCAATAAGTAACTATATTGGTAAACAATTTCCAAATTGGTTACTCGATAATTCATTACCAAATCTGGTGTCCTTAGTGTTGACGGGATGTAAATCTTGCCAACGGTTACCTTCGCTTGGACTTTTGCCATTTCTCAAGGACTTGAGTATTTCAGGATTTGATGAGATAGTGAGTATTGATGCTGATTTTCATGGGAACAACTCTTCTTCATTTAAATCTCTTCAAACTTTGTCTTTCTATGATATGAGGCAATGGGAAAAGTGGGAATGCCAAGCTGTGACAGGTGCTTTTCCACGTCTACAACGTTTATGGATACAAAATTGTCCGAAGCTGAAAGAACACCTGCCAAAGTTCGTTGCTTTAAAAGATCTATATGTCTTTAACTGCGAACAACTTGAAGCTCTGATTGTGAGTGTGATAGAATTACGTCTAGAAGAGTGTGGAAAGCTGCAGTTGGAGCGGTCTACAATGAAAAAGCTCACAAGGGATGGGCACGACATGGCAGCATCATTGGTGGCAACTGTTGGATATATGTTATTCGACACTTCTCTTGAAATCTTGGACATTGGTTCAGCTCTGGAGTCAAAAAGTGATGACTGTGTCTCTCTAAGGATCTTTCCACTGGATTTTTTCCCAACACTCAGGAGCCTTAAACTCGGTGGGTTTCCTGATCTACAAATGATCTCACAGGATCACGTTCACAATCATCTCCAGAATCTGACAATCAAAGACTGTCCAAGACTTGAGTTGTTCCCTGAAGGAGGTTTGCCATCAAATCTAAACTCCATCGAACTCATTAATTGCTTTAGACTTGTTGGCTCACTGAAAAGAGTTTTCGGAGACAGTTCTTCGTTGGAATGGTTAAAGATTGAAAAAGTAGAGGCAGAATGTTTTCCTGACGAAGGTTTGCTTCCACTCTCTCTTTCCTTTTTAATAATATATGATTGTCCAAATCTAAACAAACTGAACTACAAGGGTCTCTTAGAACTCTCATCTCTTAGAACACTGTATCTTATCAACTGTCCCAACCTCCAATGCTTACCAGAGGAGGGTCTTCCCAAATCAATTTCATCTCTTGATATAGACGACTGTCCTTTGCTCAAAGAGCGTTACCATAAAGGAGGTGAAGACAGGAAAAAGATTGCTCACATTCGAAACATATTTATATGGTAG 3444 0.3862 MVTGVLLPAFLGRTIDTLASRLVHIFSQRKHKKQLNNLKMKLLAIDVVAFDAEQKQFTDQRVRDWLLRAKDAVFDAEDLLDEIDYELSKSQVEAESQSDGKKVWNSLNSSFLSFENEIESMMEKVEDLFLDLEDLANESNILGLEKGGGVGVGSGSGSKLTYTSLPNESFIYGRDDDKKFVLNWLTSDTHNNLSILSIVGMGGLGKTCLAQHVFDDPRLEGKFDMKAWVSLPQEFDVLEVSKAILGTITGSTDHSIQEVIQKRLKEELMRKKFLLILDNVWNESPSKWEDVQKPLVFGGQGSRILVTTRSQKVAAAMRSEKHFLQVLKEDDCWDLFAKHAFQNGNPQPDPDFIEIGKKIVEKCDGLPLALKTMGSLLHNKSSLGEWESIMKSEIWHFSENESDIFPALKLSYFHLPSHLKKCFAFCALFPKGYRFDKEYLIQQWIAQYFLENPLQKKSPKEVGEEYFSDLLSRFFFQPSTNEEEKHFIMHDLLNDLAKYVSEDICIRLGVDEPKGIPKTTRHYSFSFSELCFNGFESSIDTQKLHTFTPIGKGWDWDCKMTIDDLFSRFKLIRVLSLNNCRSLTEMPKSIGNLKHLRSFDLSYTEIEKLPDSISLLYKLQILKLNYCRKLKEFPSCLHELDNLRCLELEGIRVKNVVAHLGKLKKNPQVSISSFHVEKSKEINIRQLGELNLHGSLTIDDMQNIENPSDTIEVDLKNKPHLVGLELKWNFIGSSSVDSEKVEDVIENLRPSKYLKKLSISNYIGKQFPNWLLDNSLPNLVSLVLTGCKSCQRLPSLGLLPFLKDLSISGFDEIVSIDADFHGNNSSSFKSLQTLSFYDMRQWEKWECQAVTGAFPRLQRLWIQNCPKLKEHLPKFVALKDLYVFNCEQLEALIVSVIELRLEECGKLQLERSTMKKLTRDGHDMAASLVATVGYMLFDTSLEILDIGSALESKSDDCVSLRIFPLDFFPTLRSLKLGGFPDLQMISQDHVHNHLQNLTIKDCPRLELFPEGGLPSNLNSIELINCFRLVGSLKRVFGDSSSLEWLKIEKVEAECFPDEGLLPLSLSFLIIYDCPNLNKLNYKGLLELSSLRTLYLINCPNLQCLPEEGLPKSISSLDIDDCPLLKERYHKGGEDRKKIAHIRNIFIW 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00280 1147 PANTHER DISEASE RESISTANCE PROTEIN RP 61 908 IPR044974 GO:0006952
Vimu5g00280 1147 FunFam Probable disease resistance protein At1g61300 158 322 - -
Vimu5g00280 1147 SUPERFAMILY L domain-like 489 901 - -
Vimu5g00280 1147 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 426 IPR027417 -
Vimu5g00280 1147 Gene3D Ribonuclease Inhibitor 555 926 IPR032675 -
Vimu5g00280 1147 Gene3D - 327 410 IPR042197 -
Vimu5g00280 1147 Gene3D - 11 116 - -
Vimu5g00280 1147 PRINTS Disease resistance protein signature 267 281 - -
Vimu5g00280 1147 PRINTS Disease resistance protein signature 363 377 - -
Vimu5g00280 1147 PRINTS Disease resistance protein signature 195 210 - -
Vimu5g00280 1147 PRINTS Disease resistance protein signature 567 583 - -
Vimu5g00280 1147 Gene3D - 411 499 IPR036388 -
Vimu5g00280 1147 Pfam Rx N-terminal domain 11 97 IPR041118 -
Vimu5g00280 1147 Gene3D - 156 326 IPR027417 -
Vimu5g00280 1147 FunFam Probable disease resistance protein At5g66910 326 411 - -
Vimu5g00280 1147 Pfam NB-ARC domain 176 391 IPR002182 GO:0043531
Vimu5g00280 1147 Coils Coil 118 138 - -
Vimu5g00280 1147 SUPERFAMILY L domain-like 959 1133 - -
Vimu5g00280 1147 Gene3D Ribonuclease Inhibitor 927 1144 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00280 Vimu-Chr5 2627828 2631271 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00280 192 818 WRKY Transcription Factor Family AT5G45050 22.754 4.67e-09 58.9