Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00270 ATGAGTCCTCCAGCTGAATCCAACATGATGGAAGATGGGACGCCAGGAAACACCACAGACCAAGTCGTGTCTCGCTTCGTCGAGTTCCTCAAGGGGAGAATTGCAGTTGCAGGCTGTTATAATCCCTCCATTTTCGGGGCAAATCCTAAATTGTTGGAGAATATAGTAGCCATCAAGAATGAATTAGCATTGGAAGAGAAAAGCTGTAAAGAAGCAATCAATTTGCTTGGAGAAACCAAACATATTCTTCTGACAAATATTTCATCAATGGGGAATGGAACGTCTGAAGAAGCTGAGCGGTATTGGTTTGCTTTTATTTCGTACACTGTCAAGAAATTGATCCACAAAAATGAGGAGGCTGGAAAGGAAGAGAATCTGAATTCTGGGCTTAGCTTGTGTCGTATATTGAGAGCAGCTAAGCTCAAGTATTTTACTGGCCTTTTGACTAGCATGTTATTTGTTGTTAAGGCTGGTCCAACTTTAAGTAACATATATGGAACAGATTGGGAAAACAGGCTGGAGGCGAAGGAGATACATGCCAATGCTATTCACTTGAAGATTCTTAGCAAGTACTATAAACGTGTATTTGGAGAGTTCTTTGTAACAACTGATTCAAATGCTGAAAAGAACTCAACTGTTATTGTTCATGCATCTGAATACCATCGATTTGGTTGGTTGCTTTTCTTAGCTCTTCGTGTACATGCTTTCAGCCGCTTCAGAGACTTGGTGACTTGCACCAATGGTCTAATTTCAATCTTGGCCATCTTAATTATTCATGTTCCTACTCGGTTTTGGAATTTCAACATTCATGACTCATCACGCTTTGTTAAGAAAAATAACAAAGGTGTGGACCTCCTTGCTTCACTTTGCAACATATACAACACTACTGAAGATGAGTTGAGGAAAACAATGGAGAAAGCCAATAATGTAATAGCAGATATATTGAAGAAGAAGCCCTGCTTGGCATCTGAATGCGAAACTGAAAACCTAGAAAATGTTGATAAAGATGGTTTGACCTATTTTAAAGACTTAATGGAAGAATCGTCTCTACCTTCAAGTTTAAATTTATTAGAAAAGGATTATGATTACATGATTGGCAACAAGAGTGAACTGGATGAGAGGTTATTCATTAATGAGGATGACAGCCTATTAGCTTCTGGAAGCTTGTCTGGAGGTTCTGCTTCAGCAGGTGGTGTAAAGAGGAAATTTGATTCACTGGCATCACCTTCTAAGACCATTACAAGTCCACTCTCACCTCATCGCTCTCCCTCGTCACATGCCAATGGCATCCCTGGTAGTGCAAAGATGGCAGCCACCCCTGTAAGCACAGCAATGACTACAGCAAAGTGGCTTCGAACTGTCATTTCTCAACTTGCACCAAAGCCCTCGCAAGAGCTGGAAAGATTTCTGACATCATGTGATAGGGATGTTACAAGCGATGTAGTGCGCAGAGCACAGATTATATTGCAGGCTACTTTTCCTAGTAGTCCACTTGGAGAACTATGTGTAACTGGAAGCCTGCAAAGTGCAAACCTCATGGACAATATATGGGCAGAACAACGAAGATTGGAAGCACTGAAGTTATACTACAGGGTCTTGGAGGCAATGTGCAGAGCTGAAGCTCAAGTTTTTCATGCAACTAATTTGACCTCTCTTCTTACCAATGAGAGGTTCCATCGGTGTATGCTTGCATGCTCTGCAGAATTAGTCCTGGCAACTCATAAGACTGTAACAATGTTGTTTCCTGCAGTACTTGAGAGGACTGGAATTACAGCCTTTGATCTTAGCAAGGTGATTGAAAGTTTCATTAGACATGAAGAATCTCTGCCAAGAGAATTGAGGCGACATCTGAATTCATTGGAAGAACGACTTTTGGAGAGTATGGTATGGGAAAAGGGTTCTTCAATGTATAATTCTTTGGCAGTTGCCAGACCTGCCCTTTCTGCAGAGATTAACCGCATGGGACTGTTAGCTGAACCAATGCCATCATTGGATGAAATTGCAATGCAAATTAACTTCTCTTGTGGAGGGCTGCCTCCAGTGCCTACCTTGCCCAAGCTTGAAAGTTCACCAAGTAATGTTCAGAATGGGGATATCAGATCACCAAAGCGAAATGTGTTGATGGAAAGAAATTCATTCACTTCTCCTGTGAAAGATCGGCTTCTTCCCTTCAGCAACCTTAAGTCAAAACTACCCCCACCTCCTTTGCAGTCTGCGTTTTCCAGCCCAACAAAGCCAAATCCAGCAGGTGGAGGGGAAACATGTGCAGAAACTGGTATTAACATCTTTTTCGGCAAGATCATTAAGTTGGGAGCAGTCAGAATTAGTGGCATGGTTGAAAGACTGCAATTATCCCAGCAAATAAGGGAGAATGTATACTGCCTTTTCAAGCGGATCCTACATCAACGGACATCTCTCTTCTTCAACCATCATATTGATCAAATAATCTTGTGTTGTTTCTATGGAGTTGCAAAGATTTCACAATTAAACCTAACTTTTAGAGAGATAGTATACAACTACAGAAAACAACCACATTGCAAACCACAAGTTTTCCGGAGTGTATTTGTTGATTGGTCATTAGTACGCCGAAATGGGAGAACAGGACAGGAGCATGTTGACATCATCACCTTTTACAATGAAATATTTATTCCCTCAGTAAAGCCTCTACTGGTTGAACTTGACCCTTCTGGAGCAACTACAAAAAGTGACCGAATGCCTGAATTTGATAATAAAAGTGATGGCCATTTAGCTCAATGTCCAGGATCTCCTAAAATATCATCTTTCCCTACCCTTCCCGATATGTCTCCAAAAAAAGTATCTGCTACACACAATGTATATGTCTCTCCGTTACGATCGTCCAAGATGGATGCTCTAATATCACACAGCTCAAAAAGCTATTATGCTTGTGTTGGGGAGAGCACTCATGCTTATCAGAGCCCTTCAAAAGACCTGACTGCCATCAATAACCGTTTGAATGGCAACAGGAAGGTGAGAGGACCCCTGAATTTTGATGATGTTGATGTGGGCTTGGTTAGTGATTCTATGGTTGCAAACAGCCTCTATCTGCAGAATGGAAGTTGTGCATCATCATCAGGTGCACCAGTGAAATCAGAGCAACCTGACTCTTAA 3129 0.4151 MSPPAESNMMEDGTPGNTTDQVVSRFVEFLKGRIAVAGCYNPSIFGANPKLLENIVAIKNELALEEKSCKEAINLLGETKHILLTNISSMGNGTSEEAERYWFAFISYTVKKLIHKNEEAGKEENLNSGLSLCRILRAAKLKYFTGLLTSMLFVVKAGPTLSNIYGTDWENRLEAKEIHANAIHLKILSKYYKRVFGEFFVTTDSNAEKNSTVIVHASEYHRFGWLLFLALRVHAFSRFRDLVTCTNGLISILAILIIHVPTRFWNFNIHDSSRFVKKNNKGVDLLASLCNIYNTTEDELRKTMEKANNVIADILKKKPCLASECETENLENVDKDGLTYFKDLMEESSLPSSLNLLEKDYDYMIGNKSELDERLFINEDDSLLASGSLSGGSASAGGVKRKFDSLASPSKTITSPLSPHRSPSSHANGIPGSAKMAATPVSTAMTTAKWLRTVISQLAPKPSQELERFLTSCDRDVTSDVVRRAQIILQATFPSSPLGELCVTGSLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQVFHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVARPALSAEINRMGLLAEPMPSLDEIAMQINFSCGGLPPVPTLPKLESSPSNVQNGDIRSPKRNVLMERNSFTSPVKDRLLPFSNLKSKLPPPPLQSAFSSPTKPNPAGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYCLFKRILHQRTSLFFNHHIDQIILCCFYGVAKISQLNLTFREIVYNYRKQPHCKPQVFRSVFVDWSLVRRNGRTGQEHVDIITFYNEIFIPSVKPLLVELDPSGATTKSDRMPEFDNKSDGHLAQCPGSPKISSFPTLPDMSPKKVSATHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGAPVKSEQPDS 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00270 1042 MobiDBLite consensus disorder prediction 410 433 - -
Vimu5g00270 1042 FunFam Retinoblastoma-related protein 1 442 630 - -
Vimu5g00270 1042 Pfam Retinoblastoma-associated protein B domain 760 887 IPR002719 GO:0005634|GO:0051726
Vimu5g00270 1042 Pfam Retinoblastoma-associated protein A domain 439 640 IPR002720 GO:0005634|GO:0051726
Vimu5g00270 1042 SMART RB_A_2 439 640 IPR002720 GO:0005634|GO:0051726
Vimu5g00270 1042 Gene3D - 220 378 - -
Vimu5g00270 1042 Gene3D - 724 909 - -
Vimu5g00270 1042 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 54 1040 IPR028309 GO:0006357|GO:0051726
Vimu5g00270 1042 Gene3D - 442 630 - -
Vimu5g00270 1042 SMART DUF3452_2 111 259 IPR024599 -
Vimu5g00270 1042 FunFam Retinoblastoma-related protein 1 710 923 - -
Vimu5g00270 1042 Pfam Domain of unknown function (DUF3452) 126 259 IPR024599 -
Vimu5g00270 1042 SUPERFAMILY Cyclin-like 758 897 IPR036915 -
Vimu5g00270 1042 FunFam Retinoblastoma-related protein 1 220 378 - -
Vimu5g00270 1042 Coils Coil 297 317 - -
Vimu5g00270 1042 MobiDBLite consensus disorder prediction 732 751 - -
Vimu5g00270 1042 MobiDBLite consensus disorder prediction 410 429 - -
Vimu5g00270 1042 SUPERFAMILY Cyclin-like 447 642 IPR036915 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00270 62 1042 Core Cell Cycle Gene Families AT3G12280 68.869 0.0 1355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Vimu5g00270 RB_A 1.5e-64 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00270 K04681 - gmx:100779266 1758.42