Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00267 ATGACAACGATACCGACATTCATAAATGGAACACAGCTGTTAAAGTACGTGATGTCGGAATTACTCAGCAGTTATTGGTTGACTAAAACCATCGAAGAAGAAAACACTGGTCAAATATCTTATTGTCCATTTCATTCTTACATCAACCCATTTGAATCACTCAATCCCTTTCATCCTTGTCTTATCATGGCATTAGAATTTGTTGGTGGTGCTCTTCTTTCTGTTTTCCTTGAAGTTGCATTCCAGAAGCTAGCTTCTCCCCAAATTCTCGATTTCTTTGGTGCAAGAAATCTTGATCAGAAGCTGCTGAACAAGTTGGAAACCAAGCTGCATTCCATCCATTCTCTGGCTGATGATGCAGAGGGAAAGCAGTTCACGGATCCACATGTCAGAAACTGGTTGCTTAAGGTCAAAGATGCTGTTCTTGATGCAGAGGATCTCTTGGATGATATACAAATGCTCTCCAAAAGAAAAGTGGATGATGATTCTGAATCTCAAACCTTTACGGGCTGTACTTGCAAGGTACTCAATTTCTTCAAATCTTCTCCTTTTAGTTCCCTTAACAAGGAAATTGAGTCTAGGATGGAACAAATCCTTGACGACTTAGAATTTCTCTCAAGCCAAAAGGGTGATCTAGGATTGAAAACAGCTAGCGGTGTTGGATCTGGATTGAGTAATGATCTCCCACATAAATCACAAACAACATCGTTGGTTGTTGGAACTGATATTTATGGCAGAGATCATGATAAAGAACTGATCTTTGATTGGCTGATATCCGACACCAACATTCAGAACCAGCCATCCATACTTTCTATTGTGGGAATGGGAGGGGTGGGCAAGACCACTCTTGCTCAACATGTATTCAATGACCCAAGAGTAGATGAGGCTAAATTTGATGTGAAAGCTTGGGTTTGTGTTTCAGACAAATTTGATGTTTTCAAAGTATCAAGAGCAATTCTTGAGGCTGTTACTGAATCAACCGATCATAGTAGAGATCTAGAGATGATTCACAGAAGGTTGAAAGAAAATTTGACTGAGAAGAAATTTCTTCTTGTTTTGGATGACGTTTGGAATAAAAACCAATCTAAATGGGAAGACGTGCAGAAGTCCCTTGTTTACGGAGCCAAGGGGAGTAGGATTCTTGTGACTACACGTAGTAAGGAAATTGCTTCTACAATGAGGTCAAAAGACCACTCCCTTAAGCAATTACAGGAAGATGATTGCTGGAAATTGTTTGCTAAACATGCATTCCGAGATGATGATACTCAACCGAATCCAGAGTGCAAGGAAATTGGCATGAAAATTGTTAAAAAATGTAAAGGATTACCTCTTGCCTTGAAAACAATGGGAAGTCTATTATATAAAAAATCATCTATTTCAGAATGGAAATCTGTTTTCCAAAGCGAAATATGGAAATTTTCACAAGACCGTTGTGATATTGTTCCTGCTTTAGCATTGAGTTATATTCACCTTTCTTCACACCTCAAGGTATGCTTTGCTTATTGTGCCCTATTCCCTAAGGATTATGAGTTTAGAAAGGAGGATTTGTTTCAGTTGTGGATGACAGAAAATTTCCTATACTGTTCTCATCACAGTATGACTCCAGAAGATGTTTGCCAACAATACTTCAATGATTTACTATCAAGGTCCTTCTTTCAACTATCTTATGAAAAGGAAGAAGTATTTGTTATGCATGACCTTGTACATGATTTGGCAAAATATGTTGGAGGAGGCATATACTTTATGTGGGAAGTGGGTAAAACAGAGAAGATACAAAAAAATACTCGTCATTCTTCAGTTAACCTTAGATACAATGAATATTTTGATGGGTTTGGAAAGTTATGTAATACAGAAAGGTTGCGTACCTTTATTCCAACAGGTTTTTTACTTATTAATATGTCGATACATGAATTGTTCTCCAAGTTTAAGCTTTTACGAATGTTATCTCTGTGTTTTGTTTTGGACCTTCAAGAGTTACCTGACTCTATTAGCAATCTTGGACATCTACGTTCTTTAGACCTCTCCAACACCGCAATAAAAAAATTACTTGAGAAGATATGTTTACTCACCCACTTGCAAATACTACTGAAGTTGAACTTTTGTAGAGATTTGGAGGAGTTGCCCTCAAATTTATATTTACTCACCAACTTGTACTGCCTTGAATTTATAGAGACTAAAGTGAGAAAAATGCCACCGCATTTGGAAGAACTGAAGAATCTTGAAGTAGTAATGAATTTTAGTGTTGGCCATGGCAGAGAGTTCGTTACTCACCTCTGGAGTCAATAA 2286 0.3758 MTTIPTFINGTQLLKYVMSELLSSYWLTKTIEEENTGQISYCPFHSYINPFESLNPFHPCLIMALEFVGGALLSVFLEVAFQKLASPQILDFFGARNLDQKLLNKLETKLHSIHSLADDAEGKQFTDPHVRNWLLKVKDAVLDAEDLLDDIQMLSKRKVDDDSESQTFTGCTCKVLNFFKSSPFSSLNKEIESRMEQILDDLEFLSSQKGDLGLKTASGVGSGLSNDLPHKSQTTSLVVGTDIYGRDHDKELIFDWLISDTNIQNQPSILSIVGMGGVGKTTLAQHVFNDPRVDEAKFDVKAWVCVSDKFDVFKVSRAILEAVTESTDHSRDLEMIHRRLKENLTEKKFLLVLDDVWNKNQSKWEDVQKSLVYGAKGSRILVTTRSKEIASTMRSKDHSLKQLQEDDCWKLFAKHAFRDDDTQPNPECKEIGMKIVKKCKGLPLALKTMGSLLYKKSSISEWKSVFQSEIWKFSQDRCDIVPALALSYIHLSSHLKVCFAYCALFPKDYEFRKEDLFQLWMTENFLYCSHHSMTPEDVCQQYFNDLLSRSFFQLSYEKEEVFVMHDLVHDLAKYVGGGIYFMWEVGKTEKIQKNTRHSSVNLRYNEYFDGFGKLCNTERLRTFIPTGFLLINMSIHELFSKFKLLRMLSLCFVLDLQELPDSISNLGHLRSLDLSNTAIKKLLEKICLLTHLQILLKLNFCRDLEELPSNLYLLTNLYCLEFIETKVRKMPPHLEELKNLEVVMNFSVGHGREFVTHLWSQ 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00267 761 SUPERFAMILY L domain-like 563 743 - -
Vimu5g00267 761 PRINTS Disease resistance protein signature 343 357 - -
Vimu5g00267 761 PRINTS Disease resistance protein signature 269 284 - -
Vimu5g00267 761 PRINTS Disease resistance protein signature 664 680 - -
Vimu5g00267 761 PRINTS Disease resistance protein signature 439 453 - -
Vimu5g00267 761 Gene3D - 487 574 IPR036388 -
Vimu5g00267 761 Gene3D - 402 486 IPR042197 -
Vimu5g00267 761 Gene3D - 95 186 - -
Vimu5g00267 761 PANTHER DISEASE RESISTANCE PROTEIN RP 103 742 IPR044974 GO:0006952
Vimu5g00267 761 Pfam Rx N-terminal domain 73 159 IPR041118 -
Vimu5g00267 761 FunFam Probable disease resistance protein At5g66910 402 487 - -
Vimu5g00267 761 Gene3D - 228 401 IPR027417 -
Vimu5g00267 761 Gene3D Ribonuclease Inhibitor 612 757 IPR032675 -
Vimu5g00267 761 Coils Coil 188 208 - -
Vimu5g00267 761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 232 502 IPR027417 -
Vimu5g00267 761 FunFam Probable disease resistance protein At1g61300 227 398 - -
Vimu5g00267 761 Pfam NB-ARC domain 248 467 IPR002182 GO:0043531
Vimu5g00267 761 FunFam Probable disease resistance protein At1g63360 488 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00267 Vimu-Chr5 2487425 2489710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00267 263 575 WRKY Transcription Factor Family AT5G45050 26.480 2.41e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00267 - - vra:106755071 1275.77