Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00261 ATGGCATTAGAATTTGTTGGTGGTGCTCTTCTTTCTGCTTTCCTTCAGGTGGCATTCCAGAAGCTAGTTTCTCCCCAAATTCTCGATTTCTTTCGTCAAAATAAGCTTGATCAGAAGCTGCTGACCAAGTTGGAAACCAAGCTCAATTCAATCAATTCTCTAGCTGATGATGCAGAGAGAAAGCAGTTCACGGATCCACATGTCAGAAACTGGCTGCTTAAGGTCAAAGATGCTATCCTTGATGCAGAAGATCTCTTGGATGATATACAAAAGCTCTCCGAAAGCAAAGTGGATGCTGAATCTGAATCTCAAACCTCTACAGGCTGCACTTGCAAGGTACTCAATTTCTTCAAATCTTCTCCCATTGGTTCTTTTAACAAGGAAATTGAGTCTAGGATGGAGCAAACCCTTGACGCCTTAGAATTTCTCTCAAGCCAAAAGGGTGATCTAGGGTTAAAAACAGTTAGCCGTGTTGGATATGGGTTGGGTAATGAACTGCCACAAAAATCACAAACAACATCTTTGTTGGTTGGAACTGACATTTATGGCAGAGATGATGATAAAGAAGTGATTTTAGACTGGCTGACGTCTGACATCAATCGTAACCAGCCATCAATACTTTCTATTGTGGGAATGGGCGGAGTGGGTAAGACCGCTCTTGCTCAACATGTATTCAATGACCCAAGGGTTGATGAGCCCAAATTTAATATCAAAGTTTGGGTTTGTGTTTCAGAAGAATTTGATGTTTTCAAGGTATCAAGAGCAGTTCTTGAAGCAGTCACTAAATCAACTGATGATAGTAGAAATATGGAGATGGTTCATAGAAGATTGAAAGAAAAATTGGTGGGAAAGAAATTCCTTCTCGTTTTGGATGACATTTGGAACGAAAACCAACCTAAATGGGAAGAAGTGAAGAAGCCCCTTGTTTTCGCGGCTCAAGGGAGTAGGATTCTCGTCACCACACGTAGTAAGGAAGTTGCTTCTACCATGCGGTCAGAAGTTCACTATCTAAAGCAATTACATGAAGATCATTGCTGGAAATTGTTTGCTAAACATGCATTCCGAGATGATGATGATACTCAACCAAATTCAGAGTGTAGAGAGATTGGCATGAAGATTGTAAAAAAGTGCAAAGGACTACCTCTTGCCCTGAAAACAATGGGAAGTCTATTATATAACAAATCATCCGTTTCTGAATGGGAAACATTGTTCCAAAGCGAAATATGGGAATTTTCTAAAGAGCATTGTGATATTATCCCTGCTTTGGCATTGAGCTATATCCACCTTCCTTCCCATTTGAAGGCATGCTTTGCTTATTGTGCCTTGTTCCCCAAGGATTATGAGTTTAAGAAGGAACATTTGATACAATTGTGGATGACTGAAAATCTCTTACATTGTCATCAACATAGCAAGACTCCAGAAGAAGTTTGCCAACAATACTTCAATGATCTACTATCGAGGTCCTTCTTCCAACAATCAGGTGAAAAGGTAGGACTATTTGTCATGCATGACCTTCTAAATGATTTGGCAAAATATGTGGGTGGAGACATATACTTTAGGTGGGAAGTTGATCAAGCCGAAAAGATACAAAAAGTAACTCGTCATTTCTCGATTGAACTTGGTGACAACAAATATTTTGATGGGTTTGAAAATTTATGTAACACAGAAAGGCTACGTACATTTATGCCAACAAGTAGAAGAGTGAACGATTTTGGCTACCGCTGGCATTGCTATTTGTCAATACATGAATTGTTTTCTAAGTTTAAGTTCTTACGGATCTTATCTCTGTCTTATTGTGCTGACATTATAGTGGTACCTGACTCTGTTGTTAATCTTGGACAACTGCGTTTGTTAGACCTCTCCGGTACTGCCATAAGAAAACTATCTCAAAAGATATGTTCACTATCTTACTTGCAAATACTGAAGTTGAACTACTGTACACATTTGCATGAGCTACCCTCAAATTTGCATTTACTAACTAATTTGTGTCGGCTGGAATTTATATACACTAAAGTGAAAGAGGTGCCACCACATTTGGGAAGGCTGAAGAATCTTAAAGTAGTAATGAATTCGTTTAATGTTGGTCATAACCGGGAGTCCGGTATTCAACAGCTAGGAGAACTAAACCTTGATGGAAGTCTATCAATTGGAGAGTTGCAGAATATTGAGAATTCTCTGGATGCATTAGAAGCAAATTTGAAGAATAAAAAATGCCTTATGAAGCTAAAGTTGCGATGGGATTCCAGGTGGAATTGGAACTCTATTGATTCAGTAAAAGAAGGGGAGGTAATTGAGAATCTACAACCTCCCAAAAACATAAAGAAGTTGTCAATCTTTAGCTATGGTGGCAAACAATTTCCAAATTGGTTTATGGAAAATTCATTGTGGAATATGGTGTCCTTAGTGTTGGATGAATGTGAATCTTGCCAACATTTACCACCCCTTGGAGTTTTGCCATTTCTCAGGGTCTTGAAGATTATAAAACTCGATGGGATAGTGAGTATTGATTCTGTTTTTCATGGGAACAACTCTTGTTCATTTAAATCCCTGGAAAAATTGATTTTCTCGAATATGAGACAATGGGAAAAATGGGAATGCCAAGCTGTGACAGGTGCTTTTCCACGTCTTCAAAGTCTTTCCATAAAAAATTGTCCCAATCTGAAAGGACAGTTGCCAAATCAACATGTTCCTTTGAAAACACTACAAATTACTGACTGCGAACAACTTGAAGCTTCTGCTCCTAGGTCTCTACATTTTGAACTACAAGGGTGTGGAAAGGTGTTGTTTGATTGGGCAACAATGAAAAGGTTCACATTGGGTGGGCACAACATGGAAGCATCATTGTTGGAAATGGTTAGGCATATCATACCTGACAATTCTATTGAGCACTTAGAGATTCATTCATACAATTTGAGCGATTTCCCAATCAATGATGATTCTGTCTCTCTATGGACTTTTCCACTACATTTCTTTCCAACACTGAGGATGGTTGTTCTCAGAGGGTTTGGTAATCTGCAGATGATTTCACAAGATCACACTAATAATCATCTCCAGGATTTGACCATCAAAGAGTGCTCTAAATTTGAATCATTGCCTGGAAATATGCATATGCTGCTTCCATCTCTCACGAGGCTATGCATATACGATTGTCCAAGACTTGAGTCATTCCCTGACGGAGGTTTGCCATCAAAACTAAATTTCATGAAACTCAAGAATTGCTCCAGACTTATTGGCTCATTGAAAGGAGCTTTCGGAGACAGTCCTTCTCTGAAAAGCTTGTGGATTGAAAAACTGGATGCAGAATCTTTTCCTGATGAAGATTTGCTTCCACTCTCTCTTACTTCTCTAACCATATCTGATTGTCCAAATCTAGAAAAACTTGATCACAGGGGTCTTTATCAACTCTCATCTCTCCAAAGCCTGAGTCTTTGTTACTGCCCAAAACTCCAATGCTTACCAGAGGAGGGTCTTCCCAAATCAATTTCAGGTCTTGAAATAGACGATTGTCCTTTGCTCGAACAGAGTTGCCGAAAATCAGGAGGCAAAGATTGGGAAAAAATTGCTCACATTAAAAAACTGTATATAGGAGAGTGA 3594 0.3904 MALEFVGGALLSAFLQVAFQKLVSPQILDFFRQNKLDQKLLTKLETKLNSINSLADDAERKQFTDPHVRNWLLKVKDAILDAEDLLDDIQKLSESKVDAESESQTSTGCTCKVLNFFKSSPIGSFNKEIESRMEQTLDALEFLSSQKGDLGLKTVSRVGYGLGNELPQKSQTTSLLVGTDIYGRDDDKEVILDWLTSDINRNQPSILSIVGMGGVGKTALAQHVFNDPRVDEPKFNIKVWVCVSEEFDVFKVSRAVLEAVTKSTDDSRNMEMVHRRLKEKLVGKKFLLVLDDIWNENQPKWEEVKKPLVFAAQGSRILVTTRSKEVASTMRSEVHYLKQLHEDHCWKLFAKHAFRDDDDTQPNSECREIGMKIVKKCKGLPLALKTMGSLLYNKSSVSEWETLFQSEIWEFSKEHCDIIPALALSYIHLPSHLKACFAYCALFPKDYEFKKEHLIQLWMTENLLHCHQHSKTPEEVCQQYFNDLLSRSFFQQSGEKVGLFVMHDLLNDLAKYVGGDIYFRWEVDQAEKIQKVTRHFSIELGDNKYFDGFENLCNTERLRTFMPTSRRVNDFGYRWHCYLSIHELFSKFKFLRILSLSYCADIIVVPDSVVNLGQLRLLDLSGTAIRKLSQKICSLSYLQILKLNYCTHLHELPSNLHLLTNLCRLEFIYTKVKEVPPHLGRLKNLKVVMNSFNVGHNRESGIQQLGELNLDGSLSIGELQNIENSLDALEANLKNKKCLMKLKLRWDSRWNWNSIDSVKEGEVIENLQPPKNIKKLSIFSYGGKQFPNWFMENSLWNMVSLVLDECESCQHLPPLGVLPFLRVLKIIKLDGIVSIDSVFHGNNSCSFKSLEKLIFSNMRQWEKWECQAVTGAFPRLQSLSIKNCPNLKGQLPNQHVPLKTLQITDCEQLEASAPRSLHFELQGCGKVLFDWATMKRFTLGGHNMEASLLEMVRHIIPDNSIEHLEIHSYNLSDFPINDDSVSLWTFPLHFFPTLRMVVLRGFGNLQMISQDHTNNHLQDLTIKECSKFESLPGNMHMLLPSLTRLCIYDCPRLESFPDGGLPSKLNFMKLKNCSRLIGSLKGAFGDSPSLKSLWIEKLDAESFPDEDLLPLSLTSLTISDCPNLEKLDHRGLYQLSSLQSLSLCYCPKLQCLPEEGLPKSISGLEIDDCPLLEQSCRKSGGKDWEKIAHIKKLYIGE 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00261 1197 Gene3D - 21 122 - -
Vimu5g00261 1197 Coils Coil 41 61 - -
Vimu5g00261 1197 SUPERFAMILY L domain-like 501 907 - -
Vimu5g00261 1197 SUPERFAMILY L domain-like 959 1188 - -
Vimu5g00261 1197 Pfam NB-ARC domain 185 425 IPR002182 GO:0043531
Vimu5g00261 1197 Coils Coil 75 102 - -
Vimu5g00261 1197 Gene3D - 425 512 IPR036388 -
Vimu5g00261 1197 FunFam Probable disease resistance protein At1g61300 165 335 - -
Vimu5g00261 1197 Pfam Rx N-terminal domain 11 96 IPR041118 -
Vimu5g00261 1197 Coils Coil 719 739 - -
Vimu5g00261 1197 Gene3D Ribonuclease Inhibitor 539 924 IPR032675 -
Vimu5g00261 1197 Gene3D Ribonuclease Inhibitor 933 1195 IPR032675 -
Vimu5g00261 1197 FunFam Probable disease resistance protein At1g63360 426 512 - -
Vimu5g00261 1197 Gene3D - 340 424 IPR042197 -
Vimu5g00261 1197 PRINTS Disease resistance protein signature 610 626 - -
Vimu5g00261 1197 PRINTS Disease resistance protein signature 206 221 - -
Vimu5g00261 1197 PRINTS Disease resistance protein signature 377 391 - -
Vimu5g00261 1197 PRINTS Disease resistance protein signature 280 294 - -
Vimu5g00261 1197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 440 IPR027417 -
Vimu5g00261 1197 Coils Coil 126 146 - -
Vimu5g00261 1197 Gene3D - 166 339 IPR027417 -
Vimu5g00261 1197 PANTHER DISEASE RESISTANCE PROTEIN RP 41 908 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00261 Vimu-Chr5 2455228 2458821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00261 207 404 WRKY Transcription Factor Family AT5G45050 27.358 6.18e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00261 - - vun:114170078 1477.23