Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00255 ATGGCTGCTGAATTGATCACCGGTACTCTTGTGTCCACCTTCGTTCAGATGACTATTGACAATTTGGCTTCTCGTTTTGTGGACATATTTCGTGGAAATAAAAGCAACAAGAAGCAGCTAAGCAACTTGAAGATGAAACTCCAAGCCATTGATGTTGTGGCTGATGATGCAGAACAGAAACAGTTCACAGATCTACGTGTCAGAGACTGGCTTCTCACAGCCAAAGGTATCATGCTTGATACAGAGGATCTCTTGGAGGAAATAGATCATGCACTCTCTAAAAGTCAAGTGGAAGCTGAGTCTCAGAGTTCTGCTAAAAAGGTGTGGAATTCTCTCAAATCTTCTTTCGTCAGTTTCTTTAAAAAGGAAATTGAATCAAGGATGGAAAAACTCATTGAGAACCTAGAATATCTAGCAACACAAAGCCATGATCTAGGTTTGAAAACGGCCGATGATGTTGGGGTGGGATCAGTATTCGGCAGTAAACTACGATCAACATATTTGCCAAACGAATGTGTTATCTATGGCAGAGATGATGACAAAGAATTTGTCATTAACTGGCTCACATCTGACATTCCCAACAACCTACCTATACTTTCTATAGTGGGAATGGGAGGGGTGGGTAAGACCACTCTCGCCCAACATGTATTCAATGATCCAAGGGTGGATGAGGCTAAATACGATGTCAAAGCGTGGGTTTGTGTTTCAGTTGAATTTGATGTTTTGAAGATATCAAGAAAAATTCTTGAGGATGTTACTGGATCACCTGACCAGAGTACAAATACAGATATGGTTCATAGAAGATTGAAAGAAAATCTGTCGGGAAAAAAATTTCTTCTTGTTTTGGATGATGTTTGGAACGAAAACCTATCCAATTGGGAAGAAGTGCAGAAGCCACTTCTTTTCGGAATCCAAGGGAGTAGGATTGTTGTGACTACCCGTAGTAAGGAAGTTGCTTCTACTATGCGGTCAAAAGAACACTTTCTAAAGCAATTGCAGGAAGAACATAGCTCGAAGTTGTTTGCTAAACATGCATTTCATGATGATACTCAACCAAATTCAGAGTGCAGGGAGATTGGCATGAAGATTATTAAAAAATGTAAAGGACTACCTCTTGCCTTGAAAACAATAGGAAGTCTATTATACAACAAATCATCTGTTTCAGAATGGGAAACTGTGTTCCAAAACGAGATATGGGAACTTCCAAAAGAGCGTTGTAATATTGTTCCCGCTTTAGCATTGAGCTATATCCACCTTCCTTCCCATTTGAAGGCATGTTTTGCTTATTGTGCCATGTTCCCCAAGGATTATGAGTTTAAGAAGGAACGTTTGATACAATTGTGGATGACTGAAAACTTCCTACAGCAAAGTAAGACTCCGGAAGAAACTTGCCAACAATACTTCAATGATCTACTATCGAGGTCCTTCTTTCAACGATCAGGTGATGTGGAAGAACTGTTTGTTATGCATGACCTTCTAAATGATTTGGCAAAATATGTTGCTGGAGACATATATTTCAGGTGGGAACTTGGTCAAACAAATAAGATACAAAAAGTAACTAGGCATTTGTTATTTGAACTTAGTAACTTTGGACACTTTCGTGGGTTTGGAACTTTATGCAAAACAAAAAGGTTGCGTACATTTCTTCCAACATCAGATAGGAAATTGGTTTACTTTTATTGGTATTGCAATATGGGGATAGATGAATTATTGACCAAGTTCAAGTTCTTGCATATCTTATCACTCTCTCATTGTTCTAACCTTGAAGTGTTACCTGACTCTGTCGGTAATCTTAAGCATCTCCGTTCGTTAGACCTCTCCTTTACTAACATAAAAAAACTATCTGAAAATATATGTTCACTTTCCCACTTGCAAATACTGAAGTTGAACTGTTGCAGCCTTTTGGAGGAGTTGTCCTCGAATTTGCATTTAATTATCACTTTGTGTCGCCTTGAATTTATATTCACTAAAGTGAGAAAAGTGCCACCAGGCTTGGAAAAACTTGAGAATCTTAAAGTAATAATGAATACCTTTGGTGTTGACCATAGCATGGAATCGAGTATTCAACGACTAGGAAAGCTTAACAACCTTTATGAAGACCTAAGAATATGGGGATTGCAGGACATAGAGAATCCTGAGGATGCATTAGAAGCCAATTTGAAAAATAAAACACACCTTATGAGTCTGACATTGGGATGGGAAAGGACTGGGAACTCTATTGATTCAAAAAAAGCAGAGAACGTACTTCAGAATCTGCAACCTTCCAAAAACTTAGAGGTGTTGTCAATTTTTAACTATAGTGGGAATAAATTTCCAAATTGGTGGTTACTTGATGACTCGTTTCCAAAACTGGTGACCTTAGTGTTGCGCAATTGTGAATCTTGCCAACATTTACCTCCGCTTGGTCTTTTGCCATTTCTGAAGAACCTATATATTTCAGGGTTTGATGAGATAGTGAGCATTGATGCTAATTTTCATGGAAACAACTCTTCTTCATTTCAATCCCTTAAAAATCTGGAGTTCTCCGATATGAAGCAATGGGAAAAATGGGAATGCCAAACTGTAACAGGTGCTTTTCCAACTCTTCAAATTCTTTCTATAAAGGATTGTCCGAAACTGAAAGGACAGCTGCCAAAGCTACCTGTTCCTTTGGGAACACTGAAAATTACAGGTTGCCAACAACTTGAAGCTTTCCTTCCCAGGACTCGAGCATTAGACCTACGTGACAGTGGAAAGTTGCAATTGGATTGGGCTACAATGAAATGGCCTAGAATGGGCGGGCACCACATGAAAGCATTATTCTCTGAAGGTGATGGGTCCCACACTCTTGATGACTTGGAAATTGAAGAGTCAATCAGTGATTACTCTATCCCTCTAACGACCTTTCCACTAGACTCCTTTCCAACAGTTAAGACACTTGTTCTTTCTGGGTTTGGTAATCTACAGATGATTTCACAGGATGATGTTCACAATCACCTCCAGTATCTGTTAATCAAAGAGTGCCCTGAATTAGAATCATTGCCTGCAAACATGCATATGTTGCTTCCATCTCTCTGGATGCTAGAGATAATAGACTGTCCAAGACTCAAGTTGTTGTCTAAAGGTTGTTTGCCATCGAATCTAGAAAGGATGAAATTCATTAATTGCTCTAGATTTGTTGGATCACTGAAAGGAGCTTTAGGAGACATTTCTTCTTTGGAAAGGTTGGAGATATCAAAACTGGATGCAGCATGTTTTCCTGATGAAAGTTTGCTTCCACCTTCTCTTGCTGAACTTATCTTTCGTGATTGTCCAAACCTAGAAAGACTAAACCATAAGGGGCTTTCTCAACTCTCTTCTCTCCAATCGTTGGTTCTTGAGGACTGCCCCAAACTCCAATGTTTACCAGAGCAGGGTCTTCCCCCATCAATTTCGAATCTTAAGATGAACAATTGTCCTTTGCTCAAACAGCGTTGCCAGAGAGGAGGCCAAGACTGGGAAAAGATTGCTCACATTCAATATCTTAACATGTACTAG 3516 0.3931 MAAELITGTLVSTFVQMTIDNLASRFVDIFRGNKSNKKQLSNLKMKLQAIDVVADDAEQKQFTDLRVRDWLLTAKGIMLDTEDLLEEIDHALSKSQVEAESQSSAKKVWNSLKSSFVSFFKKEIESRMEKLIENLEYLATQSHDLGLKTADDVGVGSVFGSKLRSTYLPNECVIYGRDDDKEFVINWLTSDIPNNLPILSIVGMGGVGKTTLAQHVFNDPRVDEAKYDVKAWVCVSVEFDVLKISRKILEDVTGSPDQSTNTDMVHRRLKENLSGKKFLLVLDDVWNENLSNWEEVQKPLLFGIQGSRIVVTTRSKEVASTMRSKEHFLKQLQEEHSSKLFAKHAFHDDTQPNSECREIGMKIIKKCKGLPLALKTIGSLLYNKSSVSEWETVFQNEIWELPKERCNIVPALALSYIHLPSHLKACFAYCAMFPKDYEFKKERLIQLWMTENFLQQSKTPEETCQQYFNDLLSRSFFQRSGDVEELFVMHDLLNDLAKYVAGDIYFRWELGQTNKIQKVTRHLLFELSNFGHFRGFGTLCKTKRLRTFLPTSDRKLVYFYWYCNMGIDELLTKFKFLHILSLSHCSNLEVLPDSVGNLKHLRSLDLSFTNIKKLSENICSLSHLQILKLNCCSLLEELSSNLHLIITLCRLEFIFTKVRKVPPGLEKLENLKVIMNTFGVDHSMESSIQRLGKLNNLYEDLRIWGLQDIENPEDALEANLKNKTHLMSLTLGWERTGNSIDSKKAENVLQNLQPSKNLEVLSIFNYSGNKFPNWWLLDDSFPKLVTLVLRNCESCQHLPPLGLLPFLKNLYISGFDEIVSIDANFHGNNSSSFQSLKNLEFSDMKQWEKWECQTVTGAFPTLQILSIKDCPKLKGQLPKLPVPLGTLKITGCQQLEAFLPRTRALDLRDSGKLQLDWATMKWPRMGGHHMKALFSEGDGSHTLDDLEIEESISDYSIPLTTFPLDSFPTVKTLVLSGFGNLQMISQDDVHNHLQYLLIKECPELESLPANMHMLLPSLWMLEIIDCPRLKLLSKGCLPSNLERMKFINCSRFVGSLKGALGDISSLERLEISKLDAACFPDESLLPPSLAELIFRDCPNLERLNHKGLSQLSSLQSLVLEDCPKLQCLPEQGLPPSISNLKMNNCPLLKQRCQRGGQDWEKIAHIQYLNMY 1171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00255 1171 FunFam Probable disease resistance protein At5g66910 331 415 - -
Vimu5g00255 1171 Gene3D - 415 499 IPR036388 -
Vimu5g00255 1171 Coils Coil 121 141 - -
Vimu5g00255 1171 Pfam NB-ARC domain 178 395 IPR002182 GO:0043531
Vimu5g00255 1171 Pfam Rx N-terminal domain 12 102 IPR041118 -
Vimu5g00255 1171 Gene3D - 157 331 IPR027417 -
Vimu5g00255 1171 FunFam Probable disease resistance protein At1g63360 416 499 - -
Vimu5g00255 1171 SUPERFAMILY L domain-like 958 1162 - -
Vimu5g00255 1171 PANTHER DISEASE RESISTANCE PROTEIN RP 40 873 IPR044974 GO:0006952
Vimu5g00255 1171 SUPERFAMILY L domain-like 488 881 - -
Vimu5g00255 1171 Coils Coil 40 60 - -
Vimu5g00255 1171 Gene3D - 15 142 - -
Vimu5g00255 1171 PRINTS Disease resistance protein signature 572 588 - -
Vimu5g00255 1171 PRINTS Disease resistance protein signature 198 213 - -
Vimu5g00255 1171 PRINTS Disease resistance protein signature 272 286 - -
Vimu5g00255 1171 PRINTS Disease resistance protein signature 367 381 - -
Vimu5g00255 1171 Gene3D Ribonuclease Inhibitor 946 1170 IPR032675 -
Vimu5g00255 1171 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 430 IPR027417 -
Vimu5g00255 1171 FunFam Probable disease resistance protein At1g61300 161 327 - -
Vimu5g00255 1171 Gene3D - 332 414 IPR042197 -
Vimu5g00255 1171 Gene3D Ribonuclease Inhibitor 532 913 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00255 Vimu-Chr5 2420686 2424201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00255 193 433 WRKY Transcription Factor Family AT5G45050 27.237 1.41e-09 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00255 - - vra:106752401 1559.27