Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00248 ATGGCTGCCGAAAAAATTGCCGGTGCTCTAGTGTCCACCTTTGTTGAGAGGACTATTGACAATTTGGCTTCTCAATTTGTAGACATATTTCGTGGAAATAAAAGCAACAAGAAGCAGCTAAGCAACTTGAAGGTCAAGCTCCTAGCCGTTGATGCTGTGGCTGATGATGCAGAACAGAAACAGTTCACAGATCCACATGTGAGAGATTGGCTTCTCGCAGCCAAAGATGTCATGCTTGATACAGAGGATCTCTTGGAGGAAATAGATTATGCACTCTCCAAAAGCCTAGTGGAAGCTGAATCTCAAAGTTCTACTAAAAAGGTGCGGAATTCCCTCAAATCTTCTTTCGTCAGTTTCTTTAAAAATGAAATTGAATCAAGGATGGAAGAACTCATTGAGAACCTAGAATATCTAGCAACACAAAGCCATGCTCTAGGTTTGAAAAAGGCTGATGATGTTGGAGATAGATCAGGATCAGGCAGTAAATTACGATCAACATATTTGCCAAACGAAAGTGTTATCTATGGCAGAGATGATGACAAAGAATTTGTCTTTAACTGGCTCACATCTGACATTCCCAACAACCTATCTATACTTTCTATAGTGGGAATGGGAGGGGTGGGTAAGACCACTCTTGCCCAACATGTATTCAATGATCCAAGGGTGAATGAGGCTAAATTTGATGTCAAAGCCTGGGTTTGTGTTTCAGTTGAATTTGATGTTTTCAAAGTATCAAGAAAAATTCTTGAAGATGTTACTAGATCACCTGATCATAGTTCAGATATAGATATGGTTCACAGAAGATTAAAAGAAAAATTGACGGGCAAAAAATTTTTTGTTGTTTTGGATGATGTTTGGAACGAAACCCTATCTAATTGGGAAGAGGTGCAAAAGCCCCTTCTTTTCGGAGCCCAAGGAAGTAGGATTGTTGTGACTACCCGTAGTAAGCAAGTTGTTTCTACCATGCTGTCAGAAGAATGCTTTCTAAAGCAATTGCAGGAAGATGATAGCTGGGAGTTGTTGGCTAAACATGCATTTCGTGATGGTACTGAACCAAATCCAAAGTGTAGAGAGATTGGCAAGAAGATTGTTAAAAAATGTACAGGACTACCTCTTGCCTTGAAAACAATAGGAAGTTTATTATACAACAAATCATCTCTTTCAGAATGGGAAACTGTGCTTCTAAACAAGATATGGGAGCTTCCAAATGGTGATATTGTTCCTGCTTTAGCATTGAGCTATATCCACCTGCCTTCCCATTTGAAGACCTGTTTTGCTTATTGTGCCTTGTTCCGCAAGGATTATGAGTTTAAGAAGGAAGAATTGACTCAGTTGTGGATGACTGAAAACTTCCAACAGCATAGTAAGACTCCAGATGAAACTTGTCAACAATACTTCAATGATCTACTATCAAGGTCCTTCTTTCAACGATCAAGTGATGTGGAAGAACTGTTTGTCATGCATGACCTTCTAAATGATTTGGCAAAATATGTGGCTGGAGACATATATTTCAGGTGCGAAGATCGTCAAACAAATAATATACAAAAAGTAACTCGGCATATTTTATTTGAACTTCGTAACTTTGGACGCTTTCGTGAATTTGGAACTTTATGCAAAACAAAAAGCTTGCGTACATTTCTACCAACACCAGATAGGAAACTGGATTACTTTAGTTGGTTTTGCACTATGTCGATACATGAATTGTTCTCCGAATTCAAGTTCTTGCGTATTTTATCCCTTTCTCATTGTTCTAACCTTTTAGAGTTACCTGATTCTGTCGGCAATCTTAAACTTCTTCGTTCCTTAGACCTCTCTCATACTGCAATAAGAAAACTACCTGAAAAAATATGTTCACTATCCCCCTTGCAAATACTGGAGTTGAACTATTGTACATATTTGGAAGAGTTGCCGATAAATTTGCATTTACTTACTAATTTGTGTCGCCTTGAATTTAGGTTTACTAAAGTGAGAAAAGTGCCACAAAGTTTAGAAAAACTAAAGAATCTTGTAGTAATGATGAATGTCTTTTATGTTGACTATAGCATGGAGTCGGGTATTCAACGGTTAGGAAAGCTCAATAACCTTTCTGAACACCTAGAAATTTGCGGACTGCAGTGCATTAAGAATCCTGAGGATGCATTAGAAGTCAATTTGAAGAATAAAACACACTTTGTGAGGCTGACATTGGCATGGGAGAGAACTGAGAACTCTATTGATTCAAGAAAAGCAAAAGACGTAATTGAGAATCTGCAACCTTCCAAAAACCTAAAGGAGTTGTCAATCTTAAACTATGGTGGGAGTAAATTTCCAAATTGGTTACTTCAAGATTCGTTACCAAACCTGGTGTCCTTAGTGTTGCACAATTGTGAATCTTGCCAACATTTACCTCCGCTTGGTCTTTTGTCATTTCTGAAGAAGCTGTATATTTCAGGGTTTGATGAGATAGTAAGCATTGATGCTGACTTTCATGGAAACAACTCTTCTTCATTTCAATCCCTTAAAAAGTTGGAGTTCTCCGATATGAAGCAATGGGAAAAATGGGAATGCCAAGCTGTGACAGGTGCTTTTCCAAATCTTCAAATTCTTTCTATAAAGAAATGTCCGAAACTGAAAGGACAGCTGCCAAAGCTACTTGTTCCTCTGAAAACACTAAAAATTACACGTTGCCAACAACTTGAAGCTTTCCCTCCCAGGACTCTAGAATTAGACCTACGTCACTGTGGAAAGTTGCAATTGGATTGGGCTACAATGGAATGGCCCAGAATGGACGGGCACCACATGAGAGCATTATTCTCTGAAAGTGATGGGTCCCACACTCTTGATGATTTAGAAATTGTAGAGGTAATCAGTGATGACTCTATCCCTTTAACGACCTTTCCACTAGACTCCTTCCCAACAGTCAAGAGACTCGTTCTCTCTTGGTTACGTAATCTAGAGATGATTTCACAGGATCAAGCTCATCATGATCATCTATTGGATCTGGCAATCAGAAGATGTCCTAAATTTGAATCGTTGCCTGGAAACATGCATATGCTGTCTCTTACAACGTTATGGATAGAAGACTGTCCAAGATTTAAGTCTATCCCTTTCGGAGGTTTGCCATCAAATTTGGAGAATCTGACAATCAAAGGTTGCCCTAAGTTTGAATCATTACCTGACTCTGTTGGCAATCTCAAGCTTCTTCGTTCCTTGGACCTTTCTCATACTGCAATAAGAAAACTACCTGAAAAAATATGTTCACTGTCCCGCTTGCAAATACTAGAGTTGAACTATTGTATATATTTGGAGGAGTTGCCCATAAATTTGCATTTACTCACTAATTTGTGTCGTCTTGAATTTATGTTCACTAAAGTGAAAAGATTCCCACCAAATTTGGAAAAACTAAAGAATCTTATAATAATCATGGAGTGGGGTATTCAAGGAAAGTTCAACAACTTTTATGAAGACTTATCAATTGAAATGCATGACATTGAGAATCCTCATTATGTATTCGAAACTGATTTGAAGAATAAAACAGACATTGAGAGTCTGACATTGGGATGGGAGAGGACTGGAAACTCTATTGATTCAAAAAAAGCAGAGGACGTACTTGAGAATCTACAACCTTCCAAAACTTCAAAGGAGTTGTCAATCTTTAACCATGGTGAGAATAAATTTCCAAACTGGTTACTACGAACTTCAATTTGGAATATGGTGTCGTTAGAGTTGGACAAATGTAAATCTTGCCAAAGTTTACCTCCGCTTGGTCTTTTGCCATTCCTCAAGAAGCTGGTGATTTCAGGGTTTGATCAGATAGTGAGTATTGATGCTGATTTTCATGGGAAGAACTCTTCTTCTTTTAAATCTCTTGAAACATTGTATTTCTCCGATATGAGACAATGGGAAAAATGGGAATGTAAAGTTGTGACAGGTGCTTATCCATGTCTACAACATCTTTCTATAAGCTTTTGTCCGAAACTAAAAGGACAATTGCCAGAGCAACTTGTTCCTTTGGAAACGCTACATATTACATACTGCGAACAACTTGAGGATTACGCTCCCATGGCTCTAGATTTAGAAATACGTGACTGTGGAAAGCTACGATTAGATTGCCCTACCATGAAAAGGCTCAAAATGGGTGGACACAACACGGAAGCATCATTGCCGAAAATTGTTAGATCTGACACTCTTGAACACTTAGACATTTCTTCATCCCTGGAGTCAATCAGTGATGACTGTGTCTCTGTAAGGACCATTTCACTAGATTGCTTTCCAGCACTCAGGACCCTTAATCTCAGTGGGTTTGGTAATCTACAGAAGATTTTACAGGATCACGCTCATAATCATCTCCAGGATCTGACAATCAAAAAATGTCCTAAATTTGAATCAGTATCTGGAATCATGCATATGTTGTCTCTCAAATCACTATGGATAGAAGATTGTCCGAGACTTGTGTCGTTTCCTGATGGAGGTTTGCCATCAAATCTAAATGACATGAGACTGAATAATTGTTCTAGACTTGTTTGCTCACTGAAAGGAGCTTTCGGAGACCTCTCTTGTTTGAAAAGCTTGTGGATTGAAGGAATAAATGCAGAATGTTTTCCTGGTGAAGGCTTGCTTCCACTCTCTCTTACTTCTTTAACAATATGTGATTGTCCAAATCTAGAAAAGCTGGATTATAAAGGTCTTTATCAACTCTCATCTCTCAGAAGACTGACTCTTGTTAGCTGTCCTAACCTCCAATGCTTACCAGAGGAAGGTCTTCCAAGATCAATTTCATATCTTTGTATAGGCGATTGTCCTTTGCTGGAACAGCGTTGCCAGACAGAAGGAGGGGAAGATTGGGAAAAGATTTCTCACATTCAAAATCTGAATATATTGTAG 4863 0.3852 MAAEKIAGALVSTFVERTIDNLASQFVDIFRGNKSNKKQLSNLKVKLLAVDAVADDAEQKQFTDPHVRDWLLAAKDVMLDTEDLLEEIDYALSKSLVEAESQSSTKKVRNSLKSSFVSFFKNEIESRMEELIENLEYLATQSHALGLKKADDVGDRSGSGSKLRSTYLPNESVIYGRDDDKEFVFNWLTSDIPNNLSILSIVGMGGVGKTTLAQHVFNDPRVNEAKFDVKAWVCVSVEFDVFKVSRKILEDVTRSPDHSSDIDMVHRRLKEKLTGKKFFVVLDDVWNETLSNWEEVQKPLLFGAQGSRIVVTTRSKQVVSTMLSEECFLKQLQEDDSWELLAKHAFRDGTEPNPKCREIGKKIVKKCTGLPLALKTIGSLLYNKSSLSEWETVLLNKIWELPNGDIVPALALSYIHLPSHLKTCFAYCALFRKDYEFKKEELTQLWMTENFQQHSKTPDETCQQYFNDLLSRSFFQRSSDVEELFVMHDLLNDLAKYVAGDIYFRCEDRQTNNIQKVTRHILFELRNFGRFREFGTLCKTKSLRTFLPTPDRKLDYFSWFCTMSIHELFSEFKFLRILSLSHCSNLLELPDSVGNLKLLRSLDLSHTAIRKLPEKICSLSPLQILELNYCTYLEELPINLHLLTNLCRLEFRFTKVRKVPQSLEKLKNLVVMMNVFYVDYSMESGIQRLGKLNNLSEHLEICGLQCIKNPEDALEVNLKNKTHFVRLTLAWERTENSIDSRKAKDVIENLQPSKNLKELSILNYGGSKFPNWLLQDSLPNLVSLVLHNCESCQHLPPLGLLSFLKKLYISGFDEIVSIDADFHGNNSSSFQSLKKLEFSDMKQWEKWECQAVTGAFPNLQILSIKKCPKLKGQLPKLLVPLKTLKITRCQQLEAFPPRTLELDLRHCGKLQLDWATMEWPRMDGHHMRALFSESDGSHTLDDLEIVEVISDDSIPLTTFPLDSFPTVKRLVLSWLRNLEMISQDQAHHDHLLDLAIRRCPKFESLPGNMHMLSLTTLWIEDCPRFKSIPFGGLPSNLENLTIKGCPKFESLPDSVGNLKLLRSLDLSHTAIRKLPEKICSLSRLQILELNYCIYLEELPINLHLLTNLCRLEFMFTKVKRFPPNLEKLKNLIIIMEWGIQGKFNNFYEDLSIEMHDIENPHYVFETDLKNKTDIESLTLGWERTGNSIDSKKAEDVLENLQPSKTSKELSIFNHGENKFPNWLLRTSIWNMVSLELDKCKSCQSLPPLGLLPFLKKLVISGFDQIVSIDADFHGKNSSSFKSLETLYFSDMRQWEKWECKVVTGAYPCLQHLSISFCPKLKGQLPEQLVPLETLHITYCEQLEDYAPMALDLEIRDCGKLRLDCPTMKRLKMGGHNTEASLPKIVRSDTLEHLDISSSLESISDDCVSVRTISLDCFPALRTLNLSGFGNLQKILQDHAHNHLQDLTIKKCPKFESVSGIMHMLSLKSLWIEDCPRLVSFPDGGLPSNLNDMRLNNCSRLVCSLKGAFGDLSCLKSLWIEGINAECFPGEGLLPLSLTSLTICDCPNLEKLDYKGLYQLSSLRRLTLVSCPNLQCLPEEGLPRSISYLCIGDCPLLEQRCQTEGGEDWEKISHIQNLNIL 1620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00248 1620 FunFam Probable disease resistance protein At1g61300 160 326 - -
Vimu5g00248 1620 Coils Coil 121 141 - -
Vimu5g00248 1620 Gene3D Ribonuclease Inhibitor 552 918 IPR032675 -
Vimu5g00248 1620 PANTHER DISEASE RESISTANCE PROTEIN RP 988 1340 IPR044974 GO:0006952
Vimu5g00248 1620 Gene3D - 157 329 IPR027417 -
Vimu5g00248 1620 Gene3D - 331 412 IPR042197 -
Vimu5g00248 1620 SUPERFAMILY L domain-like 949 1345 - -
Vimu5g00248 1620 Gene3D Ribonuclease Inhibitor 937 1303 IPR032675 -
Vimu5g00248 1620 Gene3D - 15 129 - -
Vimu5g00248 1620 Gene3D Ribonuclease Inhibitor 1323 1486 IPR032675 -
Vimu5g00248 1620 Gene3D Ribonuclease Inhibitor 1487 1603 IPR032675 -
Vimu5g00248 1620 SMART LRR_typ_2 643 666 IPR003591 -
Vimu5g00248 1620 SMART LRR_typ_2 596 619 IPR003591 -
Vimu5g00248 1620 SMART LRR_typ_2 1058 1081 IPR003591 -
Vimu5g00248 1620 FunFam Probable disease resistance protein At5g66910 331 405 - -
Vimu5g00248 1620 Pfam NB-ARC domain 178 394 IPR002182 GO:0043531
Vimu5g00248 1620 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 428 IPR027417 -
Vimu5g00248 1620 PRINTS Disease resistance protein signature 198 213 - -
Vimu5g00248 1620 PRINTS Disease resistance protein signature 570 586 - -
Vimu5g00248 1620 PRINTS Disease resistance protein signature 367 381 - -
Vimu5g00248 1620 PRINTS Disease resistance protein signature 272 286 - -
Vimu5g00248 1620 SUPERFAMILY L domain-like 1364 1612 - -
Vimu5g00248 1620 Pfam Rx N-terminal domain 11 97 IPR041118 -
Vimu5g00248 1620 Gene3D - 413 497 IPR036388 -
Vimu5g00248 1620 SUPERFAMILY L domain-like 486 910 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00248 Vimu-Chr5 2354322 2359184 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00248 991 1131 WRKY Transcription Factor Family AT4G12020 29.577 9.41e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00248 - - vra:106752401 2906.7