Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00247 ATGGCTGTTCAATTGATTATCGATGCTGCTCTGTCCAAATTCTTTGAGAAGACTTTTGACAATTTATTTTCTCGTTTTGGGGACATATTTCGTGGAGATAAAAGTAAAAAGAAACAGATAAGCAACTTGAAGGGGAAGCTCCTGGCCATTGATGTTGTGGCTGATGATGCAGAGCAGAAACAGTTCACAAATCCACGTGTGAGAGATTGGCTTCTCGCAGCCAAAGATGCCGTGTATGATGCAGAGGATCTCCTGGAGGAAATAGATCATGATGCTAAAGAGGTTTGGAATCCCCTCACTTCTTCTTTTACCAGTTTCTTTGAAAATAAATTTGAGACAAGGATGGAACAACTCATTGAAGACCTAGAAGATCTTGCTTCACAAAGCCATGTTCTAGGTTTGAAAAAGGCTGATGATGTTGGGGTCTCAGGATGGGTCAGTAAATTACGATCAACATATTTGCCAAATGAAAGTGTTATATATGGCAGAGATGATGACAAAAAATTTGTGTTTGAGTGGCTCACATCTAACACTCACAACAACCTGTCTATACTTTCTATTGTGGGAATGCCTGGGGTGGGTAAGACCACTCTTGCCCAACATTTATTCAATGACCCAAGGATGGATAAGAATAAATTTGATGTCAAAGTTTGGGTCTGTGTTTCAGATGAATTTGATGTTTTCAAGGTATCAAGAGCAATTCTTGAGGATGTTACTGGATCACCTGATGATAGCAGAGATACAGAGATGGTTCATAAAAGATTGAAAGAAAAGTTTACGAGGAAAAAATTTCTTCTTGTTTTAGATGACGTTTGGAATGAAAATCAATCTAAATGGGAAGAGGTGCAAAAGCCCCTTGTTTTCGGAGCCAAAGGGAGTAAGATTCTTGTCACTACACGTAATAAGGAAGTTGCTACTATCATGCAGTCAGAGGAACACTACCTAGAACAACTACCGTACAAGCATAGCTGGAGATTGTTTGCTAAACATGCATTCCGAAATGATGATACTGAACCAAATCCAGAGTACAAGGACATTGACGTCAATATTGTTAAGAAATGTAAAGGATTACCTCTTGCCTTGAAAACTATGGGTAGTCTATTATACAACAAATCATCTCTTCCAGAATGGCAAACTGTGTTCCAAAGCGAAATATGGGAATTTTCACAAGAGCGTTGTGATATTGTTCCTGCTTTAGCATTGAGCTATATCCACCTTCCATCTCATTTGAAGGTATGCTTTGCTTACTGTGCACTATTCCCTAAGGATTATGAGTTTAGAAAAGAGGATTTGATTCAGTTGTGGATGAGTGAAAATTTCTTACACAGTCATCAACATAGTAAGACTCCGGAAGAAGCTTGTCAACAATACTTCAATGATTTAAAATCAAGGTCCCTCTTTCAACAATCAGGTGAAAAGAAAGAAGTATTTGTTATGCATGACCTTCTAAATGATTTGGCAAAATATGTTACTGGAGGCATATATTTCAGATGCAAAATTGATCAAACAAAAAAAATACAAGAAGTAACTCGTCATTTTTCATTTGAACTTGATTCCAACATAGACTTTGAAGGGCTTGGAACTTTATATAAAACAGAAAGGTTACGTACATTTATGCCAACAGGTAGGAGCATGGGTCAACTTCCCTATCATTGGCATTGCAAAATGTCGATACCTGAATTGTTCACCATGTTTAACTTCTTGCGTGTCTTATCCCTCTCTCATTGTTTTGATCTTAAAGAGGTACCTGACTGTGTCGGCAATCTTAAATATCTTCGTTCGTTAGATCTCTCTCATACTGCCATAAAAAAATTATGTGAAAACATATGTTCACTCTCGTACTTACAAATACTAAAGTTGAACTATTGTAGATATTTAGAAGAGTTACCCTCAAATTTGAATTCACTCACCACTTTGTGTCGCCTTGAATTTATAGAGACTAAAGTGATAAAGGTGCCAAATTTGAAAGAGTTGAAGAATCTTAAAGTAATGATGAGTTCCTTTAAAGTTGGCTGTAGTAGCGAGTTGGGTATTCAACGGTTAGGAGAGCTCAACAACCTTCATGAAAGCCTATCAATTGAAGAGTTGGAGAAAATTGAGAAACCCCGGGATGCATCACAAGCAAATTTGAAGAATAATACACACCTTGTGAAGCTAGAGTTGAAATGGAATTCAAAGAGGGGAGAGAACTCTATTGATTCAAAAAAAGAAGAGGATGTAATTGACAAGTTGCAACCTTCCAAAAACTTAAAGGAGTTATCAATCTTTAGCTATGGAGGCAGACAATTTCCAGATTGGTTACTAGAAGATTCATTGTGGGAGATGGTGTCCTTAGCGTTGAAGGAATGTAAATCTTGCCAACGTTTACCTCCACTTGGACTTTGGAAATATCTAAAGGACTTGAAGATTGCAGGACTTGACGGGATAGTGAGTATTGATGCTGATTTTTATGGGAACAACTCTTCTTCCTTTAATTTCCTTGAAAATTTAGAGTTCTCTGATATGAAACAATTGAAAAAATGGAAATGTAAAGCTGTGAGAGGTGCTTTTCCAAGTTTAAAACGTCTTTCAATAAGTAATTGTCCCAAGCTGGAAGGAGATCTGCCAGAGCAACTTGTTCCTTTAAATGATCTAAAGATTTCTCAATGTGATCAAGCTTTAACTGTTACTGCTCTAAAAGTGCGATGGCCTACAATGAAACGTCTAAAAATAGACGGGGACAACTTGGAAGCATCAATGGTGAAAATTGTTTGGCACTTCACTTCTCTTGAAGTCTTAGACATTAATTCACACTCGAAGGCAAACAGTGATGAATCTGTCTCTCCGTGGACCTTTCCTCTACATTTCTTCCCAACATTAAATGCGCTTAATCTCAGAGGATTTCTTAATCTGCAGATGATCTCACAGGATGACCGTCATAATCATCTCAAGTATCTGACAATCGAAAAGTGCCCAAAATTTGAATCGTTGCCTGAAAGCATGCATACACTGCTTCCATCTCTCATGAGGCTAAGCATATATGATTGTCAAAAACTTGAGTCGTTCCCTCACGGAGGTTTGCCATCAAATCTAAATTTCGTGAAACTCCAGAATTGCTGCTCCACACTTATTGGGTCGTTGAAAGGAGCTTTGGGAGCCAATACCCTGAAAAGCTTGTGGATTGGACTCGTGGATGCAGAATGTTTTCCTGTTGAAGATTTGCTTCCCCTCTCTCTTACTTCTCTACACATCTATCGCTTTGAAAATCTAAAAAATTTGAACTACGAGGGTCTTCGTCAACTCTCATCTCTCAAAAAACTGAGTCTTCGTGATTGCCCCAATCTCCAAAGCTTACCGGAGGAGGGTCTTCCCGAATCAATTTCACAATTTTCAATTTCTGGTGACTGCCCGTTACTCAAACATCGTTGTCAGAGAGAAGTAGGGGAAGACTGGGAAAAGATTGCACACATCCAAAACCTGGATGTGGAAGTGATATTTCGCTGA 3483 0.3833 MAVQLIIDAALSKFFEKTFDNLFSRFGDIFRGDKSKKKQISNLKGKLLAIDVVADDAEQKQFTNPRVRDWLLAAKDAVYDAEDLLEEIDHDAKEVWNPLTSSFTSFFENKFETRMEQLIEDLEDLASQSHVLGLKKADDVGVSGWVSKLRSTYLPNESVIYGRDDDKKFVFEWLTSNTHNNLSILSIVGMPGVGKTTLAQHLFNDPRMDKNKFDVKVWVCVSDEFDVFKVSRAILEDVTGSPDDSRDTEMVHKRLKEKFTRKKFLLVLDDVWNENQSKWEEVQKPLVFGAKGSKILVTTRNKEVATIMQSEEHYLEQLPYKHSWRLFAKHAFRNDDTEPNPEYKDIDVNIVKKCKGLPLALKTMGSLLYNKSSLPEWQTVFQSEIWEFSQERCDIVPALALSYIHLPSHLKVCFAYCALFPKDYEFRKEDLIQLWMSENFLHSHQHSKTPEEACQQYFNDLKSRSLFQQSGEKKEVFVMHDLLNDLAKYVTGGIYFRCKIDQTKKIQEVTRHFSFELDSNIDFEGLGTLYKTERLRTFMPTGRSMGQLPYHWHCKMSIPELFTMFNFLRVLSLSHCFDLKEVPDCVGNLKYLRSLDLSHTAIKKLCENICSLSYLQILKLNYCRYLEELPSNLNSLTTLCRLEFIETKVIKVPNLKELKNLKVMMSSFKVGCSSELGIQRLGELNNLHESLSIEELEKIEKPRDASQANLKNNTHLVKLELKWNSKRGENSIDSKKEEDVIDKLQPSKNLKELSIFSYGGRQFPDWLLEDSLWEMVSLALKECKSCQRLPPLGLWKYLKDLKIAGLDGIVSIDADFYGNNSSSFNFLENLEFSDMKQLKKWKCKAVRGAFPSLKRLSISNCPKLEGDLPEQLVPLNDLKISQCDQALTVTALKVRWPTMKRLKIDGDNLEASMVKIVWHFTSLEVLDINSHSKANSDESVSPWTFPLHFFPTLNALNLRGFLNLQMISQDDRHNHLKYLTIEKCPKFESLPESMHTLLPSLMRLSIYDCQKLESFPHGGLPSNLNFVKLQNCCSTLIGSLKGALGANTLKSLWIGLVDAECFPVEDLLPLSLTSLHIYRFENLKNLNYEGLRQLSSLKKLSLRDCPNLQSLPEEGLPESISQFSISGDCPLLKHRCQREVGEDWEKIAHIQNLDVEVIFR 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00247 1160 Gene3D Ribonuclease Inhibitor 894 1156 IPR032675 -
Vimu5g00247 1160 Pfam Rx N-terminal domain 13 93 IPR041118 -
Vimu5g00247 1160 Coils Coil 108 128 - -
Vimu5g00247 1160 FunFam Probable disease resistance protein At1g63360 403 489 - -
Vimu5g00247 1160 Gene3D - 318 401 IPR042197 -
Vimu5g00247 1160 PRINTS Disease resistance protein signature 354 368 - -
Vimu5g00247 1160 PRINTS Disease resistance protein signature 848 864 - -
Vimu5g00247 1160 PRINTS Disease resistance protein signature 184 199 - -
Vimu5g00247 1160 PRINTS Disease resistance protein signature 258 272 - -
Vimu5g00247 1160 Gene3D - 402 489 IPR036388 -
Vimu5g00247 1160 SUPERFAMILY L domain-like 478 877 - -
Vimu5g00247 1160 FunFam Probable disease resistance protein At1g61300 146 313 - -
Vimu5g00247 1160 Gene3D Ribonuclease Inhibitor 519 893 IPR032675 -
Vimu5g00247 1160 Gene3D - 20 122 - -
Vimu5g00247 1160 SUPERFAMILY RNI-like 822 1127 - -
Vimu5g00247 1160 PANTHER DISEASE RESISTANCE PROTEIN RP 68 883 IPR044974 GO:0006952
Vimu5g00247 1160 Gene3D - 145 317 IPR027417 -
Vimu5g00247 1160 Pfam NB-ARC domain 165 382 IPR002182 GO:0043531
Vimu5g00247 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 417 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00247 Vimu-Chr5 2342459 2345941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00247 181 381 WRKY Transcription Factor Family AT5G45050 25.806 2.51e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00247 - - pvu:PHAVU_011G202900g 1249.57