Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00245 ATGGCTGCTTCGGTGGCAGGGAACGCGACCACGAACGCGGGTGTGGAGTGGCACGTGCGTCCTCCAAACCCTAAGAACCCAATCGTCTTCTTCGATGTCACCATCGGCAACATACCTGCTGGTCGAATCAAGATGGAACTCTTCGCCGACATTGCGCCCAAAACCGCCGAGAATTTCAGGCAGTTCTGCACTGGGGAGTACAGAAAAGCTGGACTTCCGGTTGGTTACAAGGGTTGTCAATTTCATAGAGTGATTAAGGATTTTATGATTCAAGCTGGCGATTTTGTAAAGGGTGATGGTAGTGGATGTGTTTCAATTTATGGACTTAAGCTTGATGATGAGAACTTTATTGCCAAACACACTGGCCCCGGCCTTCTGTCGATGGCAAACAGTGGACCAAATACCAATGGTTGTCAGTTTTTTATAACATGTGCAAAATGCGACTGGCTTGACAACAAGCATGTCGTTTTCGGGAGAGTGCTTGGAGATGGCCTTTTGGTTGTGAGGAAGATTGAGAACGTGGCAACTGGACCCAATAACCGGCCAAAATTAGCTTGCGTCATTGCAGAATGCGGTGAAATGTAA 585 0.4786 MAASVAGNATTNAGVEWHVRPPNPKNPIVFFDVTIGNIPAGRIKMELFADIAPKTAENFRQFCTGEYRKAGLPVGYKGCQFHRVIKDFMIQAGDFVKGDGSGCVSIYGLKLDDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVIAECGEM 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00245 194 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 31 192 IPR002130 GO:0000413|GO:0003755
Vimu5g00245 194 PIRSF Peptidylpro_ismrse 8 194 IPR024936 GO:0003755
Vimu5g00245 194 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 124 139 IPR002130 GO:0000413|GO:0003755
Vimu5g00245 194 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 47 62 IPR002130 GO:0000413|GO:0003755
Vimu5g00245 194 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 139 151 IPR002130 GO:0000413|GO:0003755
Vimu5g00245 194 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 152 167 IPR002130 GO:0000413|GO:0003755
Vimu5g00245 194 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 81 93 IPR002130 GO:0000413|GO:0003755
Vimu5g00245 194 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 30 193 IPR002130 GO:0000413|GO:0003755
Vimu5g00245 194 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 29 194 - -
Vimu5g00245 194 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 76 93 IPR020892 GO:0003755|GO:0006457
Vimu5g00245 194 Gene3D - 16 194 IPR029000 -
Vimu5g00245 194 SUPERFAMILY Cyclophilin-like 17 194 IPR029000 -
Vimu5g00245 194 FunFam Peptidyl-prolyl cis-trans isomerase 16 194 - -
Vimu5g00245 194 CDD cyclophilin_ABH_like 27 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00245 Vimu-Chr5 2323911 2328284 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00245 23 192 U-box Gene Family AT5G67530 41.860 1.69e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00245 K09567 - gmx:100305521 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00245 5 2323911 2328284 Vimu5g00245 5 2323911 2328284 ECH