Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00235 ATGTTAGGCCCACATGTTATAAAAGCTGGGCAGGTTGATCACGTTAAAAGGGAAATATCTATTATGAGACTGGTGAAGCACCCAAATGTTATTGAGCTTTTTGAGGTCATGGCCACAAAGAGTAAGATTTACTTTGTTATGGAATATGCAAAAGGTGGGGAACTATTTAAGAAGGTGGCCAAAGGAAAGCTCAAAGAAGATGTTGTACACAAATATTTTAGGCAGCTAGTGAATGCAGTGGATTTTTGTCACAGTAGAGGTGTATGCCAAAGAGATATAAAGCCAGAGAACATTCTGTTGGATGAAAATGATAATTTGAAGATCTCAGATTTCGGGCTAAGTGCCCTGGCTGAATCCAAACACCGAGATGGTTTGTTGCACACAGCTTCTGGAACACTTGCCTATGTTGCTCCTGAGGTCATCAAAACGAAAGGTTATGATGGTGCAAAAGCTGATATTTGGTCATGTGGGGTAGTTTTGTTTGTCTTACTAGTAGGTTACATTCCTTTTGCGAGATCCTAA 522 0.4004 MLGPHVIKAGQVDHVKREISIMRLVKHPNVIELFEVMATKSKIYFVMEYAKGGELFKKVAKGKLKEDVVHKYFRQLVNAVDFCHSRGVCQRDIKPENILLDENDNLKISDFGLSALAESKHRDGLLHTASGTLAYVAPEVIKTKGYDGAKADIWSCGVVLFVLLVGYIPFARS 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00235 173 ProSiteProfiles Protein kinase domain profile. 1 173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00235 173 SUPERFAMILY Protein kinase-like (PK-like) 8 171 IPR011009 -
Vimu5g00235 173 Pfam Protein kinase domain 11 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g00235 173 Gene3D Transferase(Phosphotransferase) domain 1 4 173 - -
Vimu5g00235 173 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 11 170 - -
Vimu5g00235 173 FunFam Maternal embryonic leucine zipper kinase 5 173 - -
Vimu5g00235 173 SMART serkin_6 5 172 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00235 Vimu-Chr5 2208775 2215057 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g00235 6 173 CBL-interacting serine-threonine protein kinases AT5G58380 73.810 1.91e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vimu5g00235 Pkinase 4.9e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00235 - K07198 gmx:100779316 294.664